Strain identifier

BacDive ID: 1893

Type strain: Yes

Species: Brucella haematophila

Strain Designation: Falu B 57617/97

Strain history: CIP <- 2007, CCUG <- 1997 O.Nyberg, Falun, Sweden: strain Falu B 57617/97

NCBI tax ID(s): 419474 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16179

BacDive-ID: 1893

DSM-Number: 22355

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming, human pathogen

description: Brucella haematophila Falu B 57617/97 is an obligate aerobe, mesophilic, Gram-negative human pathogen that forms circular colonies and was isolated from blood of a 79-year-old man.

NCBI tax id

  • NCBI tax id: 419474
  • Matching level: species

strain history

@refhistory
16179<- CIP <- CCUG
375612007, CCUG
119762CIP <- 2007, CCUG <- 1997 O.Nyberg, Falun, Sweden: strain Falu B 57617/97

doi: 10.13145/bacdive1893.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Brucellaceae
  • genus: Brucella
  • species: Brucella haematophila
  • full scientific name: Brucella haematophila (Kämpfer et al. 2007) Hördt et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Ochrobactrum haematophilum

@ref: 16179

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Brucellaceae

genus: Brucella

species: Brucella haematophila

full scientific name: Brucella haematophila (Kämpfer et al. 2007) Hördt et al. 2020

strain designation: Falu B 57617/97

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotilityconfidence
23341negative2 µmrod-shapedno
69480negative99.989
119762negativerod-shapedno

colony morphology

  • @ref: 23341
  • colony size: 2 mm
  • colony color: beige, translucent
  • colony shape: circular
  • incubation period: 1 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16179CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
23341MacConkeyyes
23341Nutrient agar (NA)yes
23341PYE agaryes
23341Reasoner's 2A agar (R2A)yes
23341Trypticase Soy Agar (TSA)yes
37561MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119762CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16179positivegrowth30mesophilic
23341positivegrowth25-30mesophilic
23341nogrowth4psychrophilic
23341nogrowth42thermophilic
37561positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119762
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
23341no
69481no100
69480no99.991

halophily

@refsaltgrowthtested relationconcentration
23341NaClpositivegrowth5 %
23341NaClnogrowth7 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2334117057cellobiose-assimilation
2334128037N-acetylgalactosamine-assimilation
2334115708trans-aconitate-assimilation
23341gamma-L-glutamate-4-nitroanilide-hydrolysis
2334191050p-nitrophenyl phenyl phosphonate-hydrolysis
2334116865gamma-aminobutyric acid+assimilation
23341178794-hydroxybenzoate+assimilation
2334115963ribitol+assimilation
2334116958beta-alanine+assimilation
2334116383cis-aconitate+assimilation
2334116947citrate+assimilation
2334115824D-fructose+assimilation
2334117306maltose+assimilation
2334117924D-sorbitol+assimilation
23341370543-hydroxybutyrate+assimilation
2334129991L-aspartate+assimilation
2334115971L-histidine+assimilation
2334115603L-leucine+assimilation
2334162345L-rhamnose+assimilation
2334168428maltitol+assimilation
2334117268myo-inositol+assimilation
23341506227N-acetylglucosamine+assimilation
233419300suberic acid+assimilation
2334117992sucrose+assimilation
2334127082trehalose+assimilation
23341L-proline-4-nitroanilide+hydrolysis
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
11976217632nitrate-reduction
11976216301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11976235581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
16179cytochrome-c oxidase+1.9.3.1
23341cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
119762oxidase+
119762catalase+1.11.1.6
119762urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119762-++--+--+-++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16179--------++++/-+++--++-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119762---------+/--------------------------------+/-+/-+/------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16179blood of a 79-year-old manFalunSwedenSWEEurope
54314Human blood,79-yr-old manFalunSwedenSWEEurope1997-09-20
119762Human, BloodFalunSwedenSWEEurope

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human#Male
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_2618.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_45;97_1426;98_2027;99_2618&stattab=map
  • Last taxonomy: Ochrobactrum
  • 16S sequence: AM422370
  • Sequence Identity:
  • Total samples: 6752
  • soil counts: 1466
  • aquatic counts: 912
  • animal counts: 3231
  • plant counts: 1143

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
16179yes, in single cases1Risk group (German classification)
1197621Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Ochrobactrum anthropi partial 16S rRNA gene, strain CCUG 38531AM1144051388ena529
16179Ochrobactrum haematophilum partial 16S rRNA gene, type strain CCUG 38531TAM4223701388ena419474

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brucella haematophila CCUG 38531GCA_005938105contigncbi419474
66792Brucella haematophila CIP 109452GCA_012103105contigncbi419474
66792Ochrobactrum haematophilum strain CCUG 38531419474.10wgspatric419474
66792Ochrobactrum haematophilum strain CIP 109452419474.11wgspatric419474

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.275yes
anaerobicno96.72no
halophileno92.407no
spore-formingno95.745no
glucose-utilyes94.854yes
aerobicyes92.013no
flagellatedno78.62yes
motileyes81.397no
thermophileno99.084no
glucose-fermentno90.282yes

External links

@ref: 16179

culture collection no.: DSM 22355, CCUG 38531, CIP 109452

straininfo link

  • @ref: 71537
  • straininfo: 56007

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17978211Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignonense sp. nov., isolated from human clinical specimens.Kampfer P, Scholz HC, Huber B, Falsen E, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.65066-02007Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Gram-Negative Bacterial Infections/microbiology, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Ochrobactrum/chemistry/*classification/genetics/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNAGenetics
Phylogeny32100690Ochrobactrum teleogrylli sp. nov., a pesticide-degrading bacterium isolated from the insect Teleogryllus occipitalis living in deserted cropland.Hu M, Li X, Li Z, Liu B, Yang Z, Tian YInt J Syst Evol Microbiol10.1099/ijsem.0.0039642020Agriculture, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gryllidae/*microbiology, Nucleic Acid Hybridization, Ochrobactrum/*classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16179Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22355)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22355
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23341Peter Kämpfer, Holger C. Scholz, Birgit Huber, Enevold Falsen, Hans-Jürgen Busse10.1099/ijs.0.65066-0Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignonense sp. nov., isolated from human clinical specimensIJSEM 57: 2513-2518 200717978211
37561Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7197
54314Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38531)https://www.ccug.se/strain?id=38531
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71537Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID56007.1StrainInfo: A central database for resolving microbial strain identifiers
119762Curators of the CIPCollection of Institut Pasteur (CIP 109452)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109452