Strain identifier

BacDive ID: 1878

Type strain: Yes

Species: Brucella anthropi

Strain history: IAM 14119 <-- LMG 3331 <-- M. Popoff ALC 037 <-- CIP 149.70.

NCBI tax ID(s): 529 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2871

BacDive-ID: 1878

DSM-Number: 6882

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, chemoorganotroph, mesophilic, Gram-negative, motile, rod-shaped, human pathogen

description: Brucella anthropi DSM 6882 is an obligate aerobe, chemoorganotroph, mesophilic human pathogen that was isolated from human clinical specimen.

NCBI tax id

  • NCBI tax id: 529
  • Matching level: species

strain history

@refhistory
2871<- LMG; LMG 3331 <- M. Popoff, IP; CIP 82.115 (Alcaligenes denitrificans) <- CIP; CIP 149-70
390321982, M. Popoff, Inst. Pasteur, Paris, France: strain ALC 037, Achromobacter sp., group Vd
67770IAM 14119 <-- LMG 3331 <-- M. Popoff ALC 037 <-- CIP 149.70.

doi: 10.13145/bacdive1878.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Brucellaceae
  • genus: Brucella
  • species: Brucella anthropi
  • full scientific name: Brucella anthropi (Holmes et al. 1988) Hördt et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Ochrobactrum anthropi

@ref: 2871

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Brucellaceae

genus: Ochrobactrum

species: Ochrobactrum anthropi

full scientific name: Ochrobactrum anthropi Holmes et al. 1988

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityflagellum arrangementconfidence
23334negativerod-shapedyesperitrichous
69480yes92.826
69480negative99.993

colony morphology

@refincubation periodcolony sizecolony shapemedium used
28711-2 days
233341 day1 mmcircularnutrient agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2871TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
2871CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
23334MacConkeyyes
23334Nutrient agar (NA)yes
39032MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
2871TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
2871COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
2871positivegrowth25mesophilic
23334nogrowth42thermophilic
23334nogrowth5psychrophilic
23334positiveoptimum20-37
39032positivegrowth30mesophilic
2871positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 23334
  • oxygen tolerance: obligate aerobe

nutrition type

  • @ref: 23334
  • type: chemoorganotroph

spore formation

@refspore formationconfidence
69481no100
69480no99.998

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2333432800(S)-mandelic acid-assimilation
23334165672-aminobenzoate-assimilation
23334283402-aminobutyrate-assimilation
23334161933-hydroxybenzoate-assimilation
2333422210aconitate-assimilation
2333417128adipate-assimilation
2333418305arbutin-assimilation
2333478208azelaate-assimilation
2333416150benzoate-assimilation
2333427689decanoate-assimilation
2333430719citraconate-assimilation
2333416919creatine-assimilation
233346731melezitose-assimilation
2333428053melibiose-assimilation
2333416634raffinose-assimilation
2333430927D-tartrate-assimilation
233344853esculin-assimilation
2333416028L-2,4-diaminobutyrate-assimilation
2333418403L-arabitol-assimilation
2333417561L-cysteine-assimilation
2333416643L-methionine-assimilation
2333417295L-phenylalanine-assimilation
2333417266L-sorbose-assimilation
2333416828L-tryptophan-assimilation
2333417895L-tyrosine-assimilation
2333465328L-xylose-assimilation
2333417716lactose-assimilation
2333418300maleic acid-assimilation
2333415792malonate-assimilation
2333430928meso-tartrate-assimilation
2333443943methyl alpha-D-mannoside-assimilation
2333432361nonanoate-assimilation
2333430623oxalate-assimilation
2333418401phenylacetate-assimilation
2333417814salicin-assimilation
2333441865sebacic acid-assimilation
2333428017starch-assimilation
233349300suberic acid-assimilation
2333418123trigonelline-assimilation
2333417151xylitol-assimilation
2333417716lactose-builds acid from
2333416634raffinose-builds acid from
2333417814salicin-builds acid from
2333416947citrate-carbon source
23334casein-degradation
2333428044phenylalanine-degradation
2333427442beta-D-fucose-hydrolysis
2333416991dna-hydrolysis
233344853esculin-hydrolysis
233345291gelatin-hydrolysis
23334320061methyl alpha-D-glucopyranoside-hydrolysis
2333417540methyl beta-D-galactoside-hydrolysis
2333428017starch-hydrolysis
2333453424tween 20-hydrolysis
2333453426tween 80-hydrolysis
2333418186tyrosine-hydrolysis
23334194752-aminopentanoic acid+assimilation
233342-oxogluconate+assimilation
23334309162-oxoglutarate+assimilation
23334879973-aminobutyrate+assimilation
23334370543-hydroxybutyrate+assimilation
23334178794-hydroxybenzoate+assimilation
23334158875-aminovaleric acid+assimilation
23334174265-dehydro-D-gluconate+assimilation
2333415963ribitol+assimilation
2333427613amygdalin+assimilation
2333416958beta-alanine+assimilation
2333417750betaine+assimilation
2333417968butyrate+assimilation
2333427689decanoate+assimilation
2333416947citrate+assimilation
2333415570D-alanine+assimilation
2333417108D-arabinose+assimilation
2333418333D-arabitol+assimilation
2333417057cellobiose+assimilation
2333428847D-fucose+assimilation
2333462318D-lyxose+assimilation
2333415588D-malate+assimilation
2333416443D-tagatose+assimilation
2333432528turanose+assimilation
2333465327D-xylose+assimilation
2333416813galactitol+assimilation
2333417113erythritol+assimilation
2333416000ethanolamine+assimilation
2333429806fumarate+assimilation
2333428260galactose+assimilation
2333428066gentiobiose+assimilation
2333424265gluconate+assimilation
2333417859glutaric acid+assimilation
2333417754glycerol+assimilation
2333415428glycine+assimilation
2333429805glycolate+assimilation
2333417268myo-inositol+assimilation
2333448944isobutyrate+assimilation
2333448942isovalerate+assimilation
2333430849L-arabinose+assimilation
2333416467L-arginine+assimilation
2333429991L-aspartate+assimilation
2333416349L-citrulline+assimilation
2333417191L-isoleucine+assimilation
2333415603L-leucine+assimilation
2333418019L-lysine+assimilation
2333415589L-malate+assimilation
2333418347L-norleucine+assimilation
2333415729L-ornithine+assimilation
2333417115L-serine+assimilation
2333416414L-valine+assimilation
2333417306maltose+assimilation
2333429864mannitol+assimilation
23334506227N-acetylglucosamine+assimilation
2333417272propionate+assimilation
2333415361pyruvate+assimilation
2333426546rhamnose+assimilation
2333433942ribose+assimilation
2333415611sarcosine+assimilation
2333430911sorbitol+assimilation
2333430031succinate+assimilation
2333417992sucrose+assimilation
2333427082trehalose+assimilation
2333431011valerate+assimilation
2333415963ribitol+builds acid from
2333422599arabinose+builds acid from
2333417057cellobiose+builds acid from
2333416236ethanol+builds acid from
2333428757fructose+builds acid from
2333417234glucose+builds acid from
2333417754glycerol+builds acid from
2333417268myo-inositol+builds acid from
2333417306maltose+builds acid from
2333429864mannitol+builds acid from
2333426546rhamnose+builds acid from
2333430911sorbitol+builds acid from
2333417992sucrose+builds acid from
2333427082trehalose+builds acid from
2333418222xylose+builds acid from
2333435020tributyrin+hydrolysis
2333417632nitrate+reduction
6836925115malate+assimilation
6836917128adipate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
233343393carbenicillinyesyes
233343770co-trimoxazoleyesyes
23334100147nalidixic acidyesyes
2333427902tetracyclineyesyes

metabolite production

@refChebi-IDmetaboliteproduction
2333453388polyhydroxybutyrateno
2333435581indoleno
2333416136hydrogen sulfideno
6836935581indoleno

metabolite tests

@refChebi-IDmetabolitecitrate testindole test
2333416947citrate-
6836935581indole-

enzymes

@refvalueactivityec
23334alpha-chymotrypsin-3.4.21.1
23334alpha-fucosidase-3.2.1.51
23334alpha-galactosidase-3.2.1.22
23334alpha-glucosidase-3.2.1.20
23334alpha-mannosidase-3.2.1.24
23334arginine dihydrolase-3.5.3.6
23334beta-galactosidase-3.2.1.23
23334beta-glucosidase-3.2.1.21
23334beta-glucuronidase-3.2.1.31
23334catalase+1.11.1.6
23334cystine arylamidase-3.4.11.3
23334cytochrome oxidase+1.9.3.1
23334esterase lipase (C 8)-
23334gelatinase-
23334lecithinase-
23334lipase (C 14)-
23334N-acetyl-beta-glucosaminidase-3.2.1.52
23334naphthol-AS-BI-phosphohydrolase-
23334phosphatase-
23334urease+3.5.1.5
23334valine arylamidase-
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
2871+---+---++++++++-++-+
2871+---+---++--++---++/--+/-
2871+---+---++++/-+++/-+-++/--+

Isolation, sampling and environmental information

isolation

@refsample type
23334human clinical specimen
2871human clinical specimen

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Infection#Patient
#Infection#Medical environment#Clinic
#Infection#Patient#Specimen

taxonmaps

  • @ref: 69479
  • File name: preview.99_2226.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_45;97_1426;98_1736;99_2226&stattab=map
  • Last taxonomy: Ochrobactrum
  • 16S sequence: AM114398
  • Sequence Identity:
  • Total samples: 2394
  • soil counts: 432
  • aquatic counts: 339
  • animal counts: 1469
  • plant counts: 154

Safety information

risk assessment

  • @ref: 2871
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Ochrobactrum anthropi 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ile gene, tRNA-Ala gene and ITS1, type strain LMG 3331AJ867295880ena439375
20218Ochrobactrum anthropi strain STM 2148 16S ribosomal RNA gene, partial sequenceAY7853141401ena529
20218Ochrobactrum anthropi ATCC:49188 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceFJ4103943617ena439375
20218O.anthrois internal transcribed spacer region between 16S and 23S rRNAX95892706ena529
2871Ochrobactrum anthropi partial 16S rRNA gene, type strain LMG 3331TAM1143981388ena439375
67770Ochrobactrum anthropi gene for 16S rRNA, strain: IAM 14119D127941436ena529

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brucella anthropi ATCC 49188GCA_000017405completencbi439375
66792Ochrobactrum anthropi ATCC 49188439375.63wgspatric439375
66792Ochrobactrum anthropi ATCC 49188439375.59plasmidpatric439375
66792Ochrobactrum anthropi ATCC 49188439375.57plasmidpatric439375
66792Ochrobactrum anthropi ATCC 49188439375.58plasmidpatric439375
66792Ochrobactrum anthropi ATCC 49188439375.60plasmidpatric439375
66792Ochrobactrum anthropi ATCC 49188439375.7completepatric439375
66792Ochrobactrum anthropi strain NCTC12168529.64wgspatric529
66792Brucella anthropi ATCC 49188640753038completeimg439375
67770Brucella anthropi ATCC 49188GCA_012103185contigncbi439375
67770Brucella anthropi NCTC12168GCA_900454235contigncbi529

GC content

@refGC-contentmethod
287157.2
2333457.00thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes84.486no
flagellatedno83.499no
gram-positiveno98.453yes
anaerobicno97.707no
halophileno93.156no
spore-formingno96.139no
thermophileno98.769no
glucose-utilyes93.881no
aerobicyes89.496yes
glucose-fermentno90.612yes

External links

@ref: 2871

culture collection no.: DSM 6882, Alc 37, ATCC 49188, CIP 149-70, CIP 82.115, LMG 3331, JCM 21032, CCUG 24695, CIP 149.70, IAM 14119, IFO 15819, NBRC 15819, NCTC 12168

straininfo link

  • @ref: 71523
  • straininfo: 88044

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2871Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6882)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6882
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23334B. HOLMES, M. POPOFF, M. KIREDJIAN, K. KERSTERS10.1099/00207713-38-4-406Ochrobactrum anthropi gen. nov., sp. nov. from Human Clinical Specimens and Previously Known as Group VdIJSEM 38: 406-416 1988
39032Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11393
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71523Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID88044.1StrainInfo: A central database for resolving microbial strain identifiers