Strain identifier
BacDive ID: 1875
Type strain: 
Species: Mycoplana ramosa
Strain Designation: M51
Strain history: T. Urakami TK0053 <-- NCIB 9440 <-- W. Hodgkiss M51 <-- P. H. H. Gray.
NCBI tax ID(s): 40837 (species)
version 8.1 (current version)
General
@ref: 3096
BacDive-ID: 1875
DSM-Number: 7292
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Mycoplana ramosa M51 is an aerobe, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 40837
- Matching level: species
strain history
| @ref | history |
|---|---|
| 3096 | <- NCIMB <- W. Hodgkiss, Torrey Research Station <- P.H.H. Gray, MacDonald College |
| 67770 | T. Urakami TK0053 <-- NCIB 9440 <-- W. Hodgkiss M51 <-- P. H. H. Gray. |
doi: 10.13145/bacdive1875.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Mycoplana
- species: Mycoplana ramosa
- full scientific name: Mycoplana ramosa Urakami et al. 1990
@ref: 3096
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Mycoplana
species: Mycoplana ramosa
full scientific name: Mycoplana ramosa Urakami et al. 1990
strain designation: M51
type strain: yes
Culture and growth conditions
culture medium
- @ref: 3096
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 3096 | positive | growth | 30 | mesophilic |
| 60670 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 60670
- oxygen tolerance: aerobe
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 3096 | soil |
| 67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_71085.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_84;97_6991;98_8648;99_71085&stattab=map
- Last taxonomy: Rhizobiaceae
- 16S sequence: EU022308
- Sequence Identity:
- Total samples: 1415
- soil counts: 501
- aquatic counts: 358
- animal counts: 132
- plant counts: 424
Safety information
risk assessment
- @ref: 3096
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Mycoplana ramosa strain DSM 7292 16S ribosomal RNA gene, partial sequence | EU022308 | 1440 | ena | 40837 |
| 20218 | Mycoplana ramosa 16S rRNA gene | D13944 | 1371 | ena | 40837 |
| 20218 | Mycoplana ramosa gene for 16S rRNA, partial sequence, strain: NBRC 15249 | AB680819 | 1410 | ena | 40837 |
GC content
- @ref: 67770
- GC-content: 63.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 3096
culture collection no.: DSM 7292, ATCC 49678, NCIMB 9440, CCUG 55609, JCM 7822, LMG 3026, IFO 15249, IAM 13949, NBRC 15249
straininfo link
- @ref: 71520
- straininfo: 3626
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 8824626 | Acetylpolyamine amidohydrolase from Mycoplana ramosa: gene cloning and characterization of the metal-substituted enzyme. | Sakurada K, Ohta T, Fujishiro K, Hasegawa M, Aisaka K | J Bacteriol | 10.1128/jb.178.19.5781-5786.1996 | 1996 | Actinomycetales/enzymology/*genetics, Amino Acid Sequence, Aminohydrolases/biosynthesis/*genetics, Apoenzymes/metabolism, Base Sequence, Cations, Divalent/metabolism, Cloning, Molecular, Cobalt/metabolism, Enzyme Activation, Escherichia coli/genetics, *Genes, Bacterial, Hydrogen-Ion Concentration, Metalloproteins/biosynthesis/*genetics, Molecular Sequence Data, Protein Engineering, Sequence Analysis, Sequence Homology, Amino Acid, Substrate Specificity, Zinc/*metabolism | Metabolism |
| Phylogeny | 28771124 | Notoacmeibacter marinus gen. nov., sp. nov., isolated from the gut of a limpet and proposal of Notoacmeibacteraceae fam. nov. in the order Rhizobiales of the class Alphaproteobacteria. | Huang Z, Guo F, Lai Q, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001951 | 2017 | Alphaproteobacteria/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Chin, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastropoda/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
| Pathogenicity | 29091816 | Chemical analysis of the Alphaproteobacterium strain MOLA1416 associated with the marine lichen Lichina pygmaea. | Parrot D, Intertaglia L, Jehan P, Grube M, Suzuki MT, Tomasi S | Phytochemistry | 10.1016/j.phytochem.2017.10.005 | 2017 | Alphaproteobacteria/*chemistry/isolation & purification/metabolism, Animals, Cell Line, Cell Proliferation/drug effects, Cell Survival/drug effects, Dose-Response Relationship, Drug, Humans, Lichens/metabolism/*microbiology, Melanoma, Experimental/*drug therapy/pathology, Mice, Molecular Structure, Oligopeptides/*chemistry/isolation & purification, Prodigiosin/*analogs & derivatives/chemistry/isolation & purification/pharmacology, Structure-Activity Relationship | Enzymology |
| Phylogeny | 31613738 | Georhizobium profundi gen. nov., sp. nov., a piezotolerant bacterium isolated from a deep-sea sediment sample of the New Britain Trench. | Cao J, Wei Y, Lai Q, Wu Y, Deng J, Li J, Liu R, Wang L, Fang J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003766 | 2020 | Alphaproteobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3096 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7292) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7292 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 60670 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 55609) | https://www.ccug.se/strain?id=55609 | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71520 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3626.1 | StrainInfo: A central database for resolving microbial strain identifiers |