Strain identifier
BacDive ID: 1874
Type strain: 
Species: Mycoplana dimorpha
Strain Designation: 103
Strain history: IAM 13154 <-- ATCC 4279 <-- H. J. Conn <-- P. H. H. Gray 103.
NCBI tax ID(s): 28320 (species)
version 8.1 (current version)
General
@ref: 2901
BacDive-ID: 1874
DSM-Number: 7138
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Mycoplana dimorpha 103 is a mesophilic, Gram-negative bacterium of the family Rhizobiaceae.
NCBI tax id
- NCBI tax id: 28320
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2901 | <- ATCC <- H.J. Conn <- P. Gray, 103 |
| 67770 | IAM 13154 <-- ATCC 4279 <-- H. J. Conn <-- P. H. H. Gray 103. |
doi: 10.13145/bacdive1874.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Mycoplana
- species: Mycoplana dimorpha
- full scientific name: Mycoplana dimorpha Gray and Thornton 1928 (Approved Lists 1980)
@ref: 2901
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Mycoplana
species: Mycoplana dimorpha
full scientific name: Mycoplana dimorpha Gray and Thornton 1928 emend. Urakami et al. 1990
strain designation: 103
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.977
Culture and growth conditions
culture medium
- @ref: 2901
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2901 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Safety information
risk assessment
- @ref: 2901
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Mycoplana dimorpha strain DSM 7138 16S ribosomal RNA gene, partial sequence | EU022307 | 1440 | ena | 28320 |
| 20218 | Mycoplana dimorpha gene for 16S rRNA, strain: IAM 13154 | D12786 | 1438 | ena | 28320 |
| 20218 | Mycoplana dimorpha gene for 16S rRNA, partial sequence, strain: NBRC 13291 | AB680397 | 1410 | ena | 28320 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycoplana dimorpha strain DSM 7138 | 28320.3 | wgs | patric | 28320 |
| 66792 | Mycoplana dimorpha DSM 7138 | 2754412936 | draft | img | 28320 |
| 67770 | Mycoplana dimorpha DSM 7138 | GCA_003046475 | scaffold | ncbi | 28320 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 85.663 | no |
| gram-positive | no | 98.409 | no |
| anaerobic | no | 97.653 | no |
| halophile | no | 88.39 | no |
| spore-forming | no | 95.541 | no |
| glucose-util | yes | 89.766 | no |
| flagellated | no | 78.497 | no |
| aerobic | yes | 89.822 | no |
| thermophile | no | 95.187 | yes |
| glucose-ferment | no | 91.485 | no |
External links
@ref: 2901
culture collection no.: DSM 7138, ATCC 4279, JCM 20847, CGMCC 4.1473, HAMBI 2262, IAM 13154, IFO 13291, LMG 4061, NBRC 13291, NCIMB 9439, NRRL B-1091, VKM Ac-911
straininfo link
- @ref: 71519
- straininfo: 3627
literature
- topic: Phylogeny
- Pubmed-ID: 16449455
- title: Shinella granuli gen. nov., sp. nov., and proposal of the reclassification of Zoogloea ramigera ATCC 19623 as Shinella zoogloeoides sp. nov.
- authors: An DS, Im WT, Yang HC, Lee ST
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63942-0
- year: 2006
- mesh: Alphaproteobacteria/chemistry/*classification/*genetics/physiology, Anaerobiosis, Animals, Bacterial Typing Techniques, Bioreactors, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/microbiology, Zoogloea/*classification
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2901 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7138) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7138 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 71519 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3627.1 | StrainInfo: A central database for resolving microbial strain identifiers |