Strain identifier
BacDive ID: 1865
Type strain:
Species: Brevibacterium samyangense
Strain Designation: SST-8
Strain history: KCCM 42316 <-- S. D. Lee SST-8.
NCBI tax ID(s): 366888 (species)
General
@ref: 8025
BacDive-ID: 1865
DSM-Number: 19451
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, ovoid-shaped
description: Brevibacterium samyangense SST-8 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sand sediment.
NCBI tax id
- NCBI tax id: 366888
- Matching level: species
strain history
@ref | history |
---|---|
8025 | <- NRRL (ARS) <- Soon Dong Lee, SST-8 |
67770 | KCCM 42316 <-- S. D. Lee SST-8. |
doi: 10.13145/bacdive1865.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Brevibacteriaceae
- genus: Brevibacterium
- species: Brevibacterium samyangense
- full scientific name: Brevibacterium samyangense Lee 2006
@ref: 8025
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Brevibacteriaceae
genus: Brevibacterium
species: Brevibacterium samyangense
full scientific name: Brevibacterium samyangense Lee 2006
strain designation: SST-8
type strain: yes
Morphology
cell morphology
- @ref: 31784
- gram stain: positive
- cell shape: ovoid-shaped
- motility: yes
pigmentation
- @ref: 31784
- production: yes
Culture and growth conditions
culture medium
- @ref: 8025
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8025 | positive | growth | 28 | mesophilic |
31784 | positive | growth | 10-45 | |
31784 | positive | optimum | 40-45 | thermophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31784 | positive | growth | 6.1-10.1 | alkaliphile |
31784 | positive | optimum | 9-10.1 |
Physiology and metabolism
oxygen tolerance
- @ref: 31784
- oxygen tolerance: aerobe
spore formation
- @ref: 31784
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31784 | NaCl | positive | growth | 0-15 % |
31784 | NaCl | positive | optimum | 0-5 % |
observation
@ref | observation |
---|---|
31784 | aggregates in chains |
67770 | quinones: MK-8(H2) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31784 | 30089 | acetate | + | carbon source |
31784 | 22599 | arabinose | + | carbon source |
31784 | 18403 | L-arabitol | + | carbon source |
31784 | 17057 | cellobiose | + | carbon source |
31784 | 23652 | dextrin | + | carbon source |
31784 | 28757 | fructose | + | carbon source |
31784 | 33984 | fucose | + | carbon source |
31784 | 28260 | galactose | + | carbon source |
31784 | 24175 | galacturonate | + | carbon source |
31784 | 17234 | glucose | + | carbon source |
31784 | 28087 | glycogen | + | carbon source |
31784 | 24996 | lactate | + | carbon source |
31784 | 17716 | lactose | + | carbon source |
31784 | 25115 | malate | + | carbon source |
31784 | 17306 | maltose | + | carbon source |
31784 | 29864 | mannitol | + | carbon source |
31784 | 37684 | mannose | + | carbon source |
31784 | 506227 | N-acetylglucosamine | + | carbon source |
31784 | 17272 | propionate | + | carbon source |
31784 | 16634 | raffinose | + | carbon source |
31784 | 26546 | rhamnose | + | carbon source |
31784 | 33942 | ribose | + | carbon source |
31784 | 17814 | salicin | + | carbon source |
31784 | 30911 | sorbitol | + | carbon source |
31784 | 17992 | sucrose | + | carbon source |
31784 | 27082 | trehalose | + | carbon source |
31784 | 17151 | xylitol | + | carbon source |
enzymes
- @ref: 31784
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
8025 | sand sediment | Samyang beach, Jeju Island | Republic of Korea | KOR | Asia |
67770 | Beach sediment of the coast of Jeju Island | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Sandy |
#Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_23070.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15817;96_11662;97_14105;98_17390;99_23070&stattab=map
- Last taxonomy: Brevibacterium samyangense subclade
- 16S sequence: DQ344485
- Sequence Identity:
- Total samples: 1499
- soil counts: 160
- aquatic counts: 89
- animal counts: 1207
- plant counts: 43
Safety information
risk assessment
- @ref: 8025
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8025
- description: Brevibacterium samyangense strain SST-8 16S ribosomal RNA gene, partial sequence
- accession: DQ344485
- length: 1426
- database: ena
- NCBI tax ID: 366888
GC content
@ref | GC-content | method |
---|---|---|
8025 | 70.7 | |
67770 | 70.7 | high performance liquid chromatography (HPLC) |
External links
@ref: 8025
culture collection no.: DSM 19451, KCCM 42316, NRRL B-41420, JCM 14546
straininfo link
- @ref: 71510
- straininfo: 297147
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16902026 | Brevibacterium samyangense sp. nov., an actinomycete isolated from a beach sediment. | Lee SD | Int J Syst Evol Microbiol | 10.1099/ijs.0.64269-0 | 2006 | Base Composition, Brevibacterium/chemistry/*classification/genetics/isolation & purification, Cyanoacrylates/analysis, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Peptidoglycan/analysis, Phosphatidylglycerols/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Vitamin K 2/analogs & derivatives | Genetics |
Phylogeny | 18319457 | Brevibacterium album sp. nov., a novel actinobacterium isolated from a saline soil in China. | Tang SK, Wang Y, Schumann P, Stackebrandt E, Lou K, Jiang CL, Xu LH, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.65183-0 | 2008 | Bacterial Typing Techniques, Brevibacterium/chemistry/*classification/genetics/isolation & purification, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride/chemistry, Soil/*analysis, *Soil Microbiology, Species Specificity | Genetics |
Phylogeny | 22368170 | Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture. | Cui Y, Kang MS, Woo SG, Jin L, Kim KK, Park J, Lee M, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.038141-0 | 2012 | Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Brevibacterium/*classification/genetics/isolation & purification/metabolism, Carbohydrates/analysis, *Chlorophenols, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nitrates/*metabolism, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Metabolism |
Phylogeny | 32816658 | Brevibacterium rongguiense sp. nov., isolated from freshwater sediment. | Deng T, Lu H, Qian Y, Chen X, Yang X, Guo J, Sun G, Xu M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004379 | 2020 | Bacterial Typing Techniques, Base Composition, Brevibacterium/*classification/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
8025 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19451) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19451 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31784 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28056 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
71510 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297147.1 | StrainInfo: A central database for resolving microbial strain identifiers |