Strain identifier

BacDive ID: 1865

Type strain: Yes

Species: Brevibacterium samyangense

Strain Designation: SST-8

Strain history: KCCM 42316 <-- S. D. Lee SST-8.

NCBI tax ID(s): 366888 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8025

BacDive-ID: 1865

DSM-Number: 19451

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, ovoid-shaped

description: Brevibacterium samyangense SST-8 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sand sediment.

NCBI tax id

  • NCBI tax id: 366888
  • Matching level: species

strain history

@refhistory
8025<- NRRL (ARS) <- Soon Dong Lee, SST-8
67770KCCM 42316 <-- S. D. Lee SST-8.

doi: 10.13145/bacdive1865.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Brevibacteriaceae
  • genus: Brevibacterium
  • species: Brevibacterium samyangense
  • full scientific name: Brevibacterium samyangense Lee 2006

@ref: 8025

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Brevibacteriaceae

genus: Brevibacterium

species: Brevibacterium samyangense

full scientific name: Brevibacterium samyangense Lee 2006

strain designation: SST-8

type strain: yes

Morphology

cell morphology

  • @ref: 31784
  • gram stain: positive
  • cell shape: ovoid-shaped
  • motility: yes

pigmentation

  • @ref: 31784
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8025
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8025positivegrowth28mesophilic
31784positivegrowth10-45
31784positiveoptimum40-45thermophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
31784positivegrowth6.1-10.1alkaliphile
31784positiveoptimum9-10.1

Physiology and metabolism

oxygen tolerance

  • @ref: 31784
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31784
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
31784NaClpositivegrowth0-15 %
31784NaClpositiveoptimum0-5 %

observation

@refobservation
31784aggregates in chains
67770quinones: MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3178430089acetate+carbon source
3178422599arabinose+carbon source
3178418403L-arabitol+carbon source
3178417057cellobiose+carbon source
3178423652dextrin+carbon source
3178428757fructose+carbon source
3178433984fucose+carbon source
3178428260galactose+carbon source
3178424175galacturonate+carbon source
3178417234glucose+carbon source
3178428087glycogen+carbon source
3178424996lactate+carbon source
3178417716lactose+carbon source
3178425115malate+carbon source
3178417306maltose+carbon source
3178429864mannitol+carbon source
3178437684mannose+carbon source
31784506227N-acetylglucosamine+carbon source
3178417272propionate+carbon source
3178416634raffinose+carbon source
3178426546rhamnose+carbon source
3178433942ribose+carbon source
3178417814salicin+carbon source
3178430911sorbitol+carbon source
3178417992sucrose+carbon source
3178427082trehalose+carbon source
3178417151xylitol+carbon source

enzymes

  • @ref: 31784
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8025sand sedimentSamyang beach, Jeju IslandRepublic of KoreaKORAsia
67770Beach sediment of the coast of Jeju IslandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_23070.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15817;96_11662;97_14105;98_17390;99_23070&stattab=map
  • Last taxonomy: Brevibacterium samyangense subclade
  • 16S sequence: DQ344485
  • Sequence Identity:
  • Total samples: 1499
  • soil counts: 160
  • aquatic counts: 89
  • animal counts: 1207
  • plant counts: 43

Safety information

risk assessment

  • @ref: 8025
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8025
  • description: Brevibacterium samyangense strain SST-8 16S ribosomal RNA gene, partial sequence
  • accession: DQ344485
  • length: 1426
  • database: ena
  • NCBI tax ID: 366888

GC content

@refGC-contentmethod
802570.7
6777070.7high performance liquid chromatography (HPLC)

External links

@ref: 8025

culture collection no.: DSM 19451, KCCM 42316, NRRL B-41420, JCM 14546

straininfo link

  • @ref: 71510
  • straininfo: 297147

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16902026Brevibacterium samyangense sp. nov., an actinomycete isolated from a beach sediment.Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.64269-02006Base Composition, Brevibacterium/chemistry/*classification/genetics/isolation & purification, Cyanoacrylates/analysis, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Peptidoglycan/analysis, Phosphatidylglycerols/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Vitamin K 2/analogs & derivativesGenetics
Phylogeny18319457Brevibacterium album sp. nov., a novel actinobacterium isolated from a saline soil in China.Tang SK, Wang Y, Schumann P, Stackebrandt E, Lou K, Jiang CL, Xu LH, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.65183-02008Bacterial Typing Techniques, Brevibacterium/chemistry/*classification/genetics/isolation & purification, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride/chemistry, Soil/*analysis, *Soil Microbiology, Species SpecificityGenetics
Phylogeny22368170Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture.Cui Y, Kang MS, Woo SG, Jin L, Kim KK, Park J, Lee M, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.038141-02012Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Brevibacterium/*classification/genetics/isolation & purification/metabolism, Carbohydrates/analysis, *Chlorophenols, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nitrates/*metabolism, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisMetabolism
Phylogeny32816658Brevibacterium rongguiense sp. nov., isolated from freshwater sediment.Deng T, Lu H, Qian Y, Chen X, Yang X, Guo J, Sun G, Xu MInt J Syst Evol Microbiol10.1099/ijsem.0.0043792020Bacterial Typing Techniques, Base Composition, Brevibacterium/*classification/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8025Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19451)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19451
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31784Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2805628776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71510Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297147.1StrainInfo: A central database for resolving microbial strain identifiers