Strain identifier

BacDive ID: 1860

Type strain: Yes

Species: Brevibacterium picturae

Strain Designation: R-5391

Strain history: CIP <- 2005, DSMZ <- J. Heyrman, Ghent Univ., Ghent, Belgium: strain R-5391

NCBI tax ID(s): 260553 (species)

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General

@ref: 6306

BacDive-ID: 1860

DSM-Number: 16132

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Brevibacterium picturae R-5391 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from biofilm covering mural painting.

NCBI tax id

  • NCBI tax id: 260553
  • Matching level: species

strain history

@refhistory
6306<- J. Heyrman; R-5391
67770LMG 22061 <-- J. Heyrman R-5391.
121822CIP <- 2005, DSMZ <- J. Heyrman, Ghent Univ., Ghent, Belgium: strain R-5391

doi: 10.13145/bacdive1860.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Brevibacteriaceae
  • genus: Brevibacterium
  • species: Brevibacterium picturae
  • full scientific name: Brevibacterium picturae Heyrman et al. 2004

@ref: 6306

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Brevibacteriaceae

genus: Brevibacterium

species: Brevibacterium picturae

full scientific name: Brevibacterium picturae Heyrman et al. 2004

strain designation: R-5391

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31255positive2.75 µm1 µmcoccus-shapedno
121822positiverod-shapedno

colony morphology

  • @ref: 121822

pigmentation

  • @ref: 31255
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6306TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37575Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
121822CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
121822CIP Medium 338yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=338

culture temp

@refgrowthtypetemperaturerange
6306positivegrowth28mesophilic
31255positivegrowth15-37
31255positiveoptimum25mesophilic
37575positivegrowth30mesophilic
67770positivegrowth28mesophilic
121822positivegrowth10-30
121822nogrowth37mesophilic
121822nogrowth41thermophilic
121822nogrowth45thermophilic

culture pH

@refabilitytypepHPH range
31255positivegrowth06-09alkaliphile
31255positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31255aerobe
121822obligate aerobe

spore formation

  • @ref: 31255
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31255NaClpositivegrowth05-15 %
31255NaClpositiveoptimum10 %
121822NaClpositivegrowth2-10 %
121822NaClnogrowth0 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3125517234glucose+carbon source
12182216947citrate+carbon source
1218224853esculin-hydrolysis
121822606565hippurate-hydrolysis
12182217632nitrate-reduction
12182216301nitrite-reduction
12182217632nitrate-respiration

metabolite production

  • @ref: 121822
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12182215688acetoin-
12182217234glucose-

enzymes

@refvalueactivityec
31255acid phosphatase+3.1.3.2
31255alkaline phosphatase+3.1.3.1
31255catalase+1.11.1.6
31255gelatinase+
31255pyrazinamidase+3.5.1.B15
31255urease+3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
121822oxidase-
121822beta-galactosidase-3.2.1.23
121822alcohol dehydrogenase-1.1.1.1
121822gelatinase+
121822amylase-
121822DNase-
121822caseinase+3.4.21.50
121822catalase+1.11.1.6
121822tween esterase-
121822gamma-glutamyltransferase+2.3.2.2
121822lecithinase-
121822lipase-
121822lysine decarboxylase-4.1.1.18
121822ornithine decarboxylase-4.1.1.17
121822phenylalanine ammonia-lyase-4.3.1.24
121822tryptophan deaminase-
121822urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121822-+++-+----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121822+-+-++------+-------------+----+-------------+--++---+------+++++----+++++-+--++++++--+++++++++++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6306biofilm covering mural paintingStyriaAustriaAUTEurope
67770Damaged mural painting at the Saint-Catherine chapel of Castle HerbersteinAustriaAUTEurope
121822Covering mural paintingAustriaAUTEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Painting
#Environmental#Biofilm

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
63061Risk group (German classification)
1218221Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6306
  • description: Brevibacterium picturae partial 16S rRNA gene, type strain LMG 22061T
  • accession: AJ620364
  • length: 1493
  • database: ena
  • NCBI tax ID: 260553

GC content

@refGC-contentmethod
630663.3
6777063.3high performance liquid chromatography (HPLC)

External links

@ref: 6306

culture collection no.: DSM 16132, CIP 108823, LMG 22061, JCM 13319

straininfo link

  • @ref: 71505
  • straininfo: 128654

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15388707Brevibacterium picturae sp. nov., isolated from a damaged mural painting at the Saint-Catherine chapel (Castle Herberstein, Austria).Heyrman J, Verbeeren J, Schumann P, Devos J, Swings J, De Vos PInt J Syst Evol Microbiol10.1099/ijs.0.63144-02004Austria, Base Composition, Brevibacterium/chemistry/*classification/genetics/*isolation & purification, Cardiolipins/analysis, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Diaminopimelic Acid/analysis, Enzymes/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Mycolic Acids/analysis, *Paintings, Peptidoglycan/analysis, Phosphatidylglycerols/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysisEnzymology
Phylogeny18218957Brevibacterium marinum sp. nov., isolated from seawater.Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.65099-02008Bacterial Typing Techniques, Base Composition, Brevibacterium/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species SpecificityGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6306Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16132)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16132
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31255Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2757828776041
37575Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6494
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
71505Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID128654.1StrainInfo: A central database for resolving microbial strain identifiers
121822Curators of the CIPCollection of Institut Pasteur (CIP 108823)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108823