Strain identifier

BacDive ID: 1855

Type strain: Yes

Species: Brevibacterium avium

Strain Designation: 280/80

Strain history: CIP <- 2000, NCIMB <- NCFB

NCBI tax ID(s): 83828 (species)

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General

@ref: 6134

BacDive-ID: 1855

DSM-Number: 15880

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped, animal pathogen

description: Brevibacterium avium 280/80 is an aerobe, mesophilic, Gram-positive animal pathogen that was isolated from bumble-foot lesion of a domestic fowl.

NCBI tax id

  • NCBI tax id: 83828
  • Matching level: species

strain history

@refhistory
6134<- JCM <- CCUG <- NCIMB <- D. Pilcher; 280/80 <- K. Mohan
67770CCUG 43455 <-- NCIMB 703055 <-- D. Pilcher 280/80.
116669CIP <- 2000, NCIMB <- NCFB

doi: 10.13145/bacdive1855.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Brevibacteriaceae
  • genus: Brevibacterium
  • species: Brevibacterium avium
  • full scientific name: Brevibacterium avium Pascual and Collins 1999

@ref: 6134

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Brevibacteriaceae

genus: Brevibacterium

species: Brevibacterium avium

full scientific name: Brevibacterium avium Pascual and Collins 1999

strain designation: 280/80

type strain: yes

Morphology

cell morphology

  • @ref: 116669
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 116669

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6134TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37083MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116669CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6134positivegrowth37mesophilic
37083positivegrowth30mesophilic
55873positivegrowth37mesophilic
67770positivegrowth37mesophilic
116669positivegrowth15-41
116669nogrowth10psychrophilic
116669nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
55873aerobe
116669obligate aerobe

halophily

  • @ref: 116669
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11666916947citrate+carbon source
1166694853esculin-hydrolysis
116669606565hippurate-hydrolysis
11666917632nitrate+reduction
11666916301nitrite-reduction
11666917632nitrate-respiration

antibiotic resistance

  • @ref: 116669
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 116669
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11666915688acetoin-
11666917234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
116669oxidase+
116669beta-galactosidase-3.2.1.23
116669alcohol dehydrogenase-1.1.1.1
116669gelatinase+/-
116669amylase-
116669caseinase+3.4.21.50
116669catalase+1.11.1.6
116669tween esterase-
116669gamma-glutamyltransferase-2.3.2.2
116669lecithinase-
116669lipase-
116669lysine decarboxylase-4.1.1.18
116669ornithine decarboxylase-4.1.1.17
116669phenylalanine ammonia-lyase-4.3.1.24
116669protease-
116669tryptophan deaminase-
116669urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116669--++-+--+-++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116669+++-+--------------++-----+----+-+--------------+++--+-------++++-------++-+-+-+++-+--+-+++++++++++

Isolation, sampling and environmental information

isolation

@refsample typesampling dateisolation date
6134bumble-foot lesion of a domestic fowl
55873Poultry,bumble-foot lesion1981
67770Bumble-foot lesion of a domestic fowl
116669Bumble foot turkeys1981

isolation source categories

Cat1Cat2
#Infection#Disease
#Host#Birds

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
6134yes2Risk group (German classification)
1166691Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6134
  • description: Brevibacterium avium 16S rRNA gene, strain NCFB 3055
  • accession: Y17962
  • length: 1394
  • database: ena
  • NCBI tax ID: 83828

External links

@ref: 6134

culture collection no.: DSM 15880, CCUG 43455, CIP 106532, JCM 11680, NCIMB 703055, BCRC 16989, NCFB 3055

straininfo link

  • @ref: 71500
  • straininfo: 62121

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10555333Brevibacterium avium sp. nov., isolated from poultry.Pascual C, Collins MDInt J Syst Bacteriol10.1099/00207713-49-4-15271999Animals, Bacterial Typing Techniques, Brevibacterium/*classification/isolation & purification/physiology, Genes, rRNA, Gram-Positive Bacterial Infections/microbiology/*veterinary, Granuloma/microbiology, Molecular Sequence Data, Phylogeny, Poultry, Poultry Diseases/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny30063198Brevibacterium hankyongi sp. nov., isolated from compost.Choi KD, Siddiqi MZ, Liu Q, Muhammad Shafi S, Durrani Y, Lee SY, Kang MS, Im WTInt J Syst Evol Microbiol10.1099/ijsem.0.0028862018Bacterial Typing Techniques, Base Composition, Brevibacterium/*classification/genetics/isolation & purification, *Composting, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitle
6134Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15880)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15880
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37083Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18673
55873Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43455)https://www.ccug.se/strain?id=43455
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
71500Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID62121.1StrainInfo: A central database for resolving microbial strain identifiers
116669Curators of the CIPCollection of Institut Pasteur (CIP 106532)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106532