Strain identifier

BacDive ID: 1846

Type strain: Yes

Species: Peribacillus frigoritolerans

Strain Designation: WS 1085, 6720

Strain history: CIP <- 1967, B. Delaporte, Inst. Pasteur, Paris, France

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3407

BacDive-ID: 1846

DSM-Number: 8801

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Peribacillus frigoritolerans WS 1085 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

strain history

@refhistory
3407<- H. Seiler, WS 1085 <- ATCC <- B. Delaporte, 6720 <- A. Sasson
341081967, B. Delaporte, Inst. Pasteur, Paris, France
67770CCUG 43489 <-- CIP 67.20 <-- B. Delaporte.
115952CIP <- 1967, B. Delaporte, Inst. Pasteur, Paris, France

doi: 10.13145/bacdive1846.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Peribacillus
  • species: Peribacillus frigoritolerans
  • full scientific name: Peribacillus frigoritolerans (Delaporte and Sasson 1967) Montecillo and Bae 2022
  • synonyms

    @refsynonym
    20215Bacillus frigoritolerans
    20215Brevibacterium frigoritolerans

@ref: 3407

domain: Bacteria

phylum: Bacillota

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Peribacillus

species: Peribacillus frigoritolerans

full scientific name: Peribacillus frigoritolerans (Delaporte and Sasson 1967) Montecillo and Bae 2022

strain designation: WS 1085, 6720

type strain: yes

Morphology

cell morphology

  • @ref: 115952
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refcolony colorincubation periodmedium used
20209Brown beige (1011)10-14 daysISP 2
20209Beige (1001)10-14 daysISP 3
20209Oyster white (1013)10-14 daysISP 4
20209Oyster white (1013)10-14 daysISP 5
20209Ivory (1014)10-14 daysISP 6
20209Oyster white (1013)10-14 daysISP 7

multicellular morphology

@refforms multicellular complexmedium name
20209noISP 2
20209noISP 3
20209noISP 4
20209noISP 5
20209noISP 6
20209noISP 7

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3407TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
20209ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20209ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20209ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20209ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20209ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20209ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
34108MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
115952CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
115952CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
20209positiveoptimum28mesophilic
3407positivegrowth30mesophilic
34108positivegrowth25mesophilic
55893positivegrowth25-37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
55893aerobe
115952obligate aerobe

halophily

  • @ref: 20209
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 7.5 %

murein

  • @ref: 3407
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2020917234glucose+
2020922599arabinose+
2020917992sucrose+
2020918222xylose-
2020917268myo-inositol+
2020929864mannitol-
2020928757fructose+
2020926546rhamnose-
2020916634raffinose+
2020962968cellulose+
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
11595217632nitrate+reduction
11595216301nitrite-reduction
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea+hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
11595235581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382alkaline phosphatase-3.1.3.1
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
115952oxidase-
115952catalase+1.11.1.6
115952urease-3.5.1.5

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
20209--+-----+++--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
20209--+-----+++--------
115952-++-++--+++---+-----

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
20209---------+-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
115952----------+/-+/----------+/---------+/-+/---+/---------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
3407soilMoroccoMARAfrica
55893SoilMoroccoMARAfrica
67770Arid soilMoroccoMARAfrica
115952Environment, SoilMoroccoMARAfrica

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_583.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_370;97_418;98_477;99_583&stattab=map
  • Last taxonomy: Peribacillus
  • 16S sequence: AM747813
  • Sequence Identity:
  • Total samples: 10636
  • soil counts: 6241
  • aquatic counts: 1051
  • animal counts: 2464
  • plant counts: 880

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
34071Risk group (German classification)
202091
1159521Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218[Brevibacterium] frigoritolerans 16S rRNA gene, type strain DSM 8801TAM7478131540ena450367
20218[Brevibacterium] frigoritolerans strain DSM 8801 16S ribosomal RNA gene, partial sequenceGU2521281503ena450367

Genome sequences

  • @ref: 66792
  • description: Peribacillus frigoritolerans DSM 8801
  • accession: GCA_024169475
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 450367

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes72.919no
gram-positiveyes93.761no
anaerobicno99.011yes
aerobicyes91.603yes
halophileno82.02no
spore-formingyes96.036no
motileyes83.656no
glucose-fermentno92.239yes
thermophileno99.017yes
glucose-utilyes89.085no

External links

@ref: 3407

culture collection no.: DSM 8801, ATCC 25097, CCUG 43489, CIP 67.20, JCM 11681

straininfo link

  • @ref: 71491
  • straininfo: 14240

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24903955Bacillus huizhouensis sp. nov., isolated from a paddy field soil.Li J, Yang G, Wu M, Zhao Y, Zhou SAntonie Van Leeuwenhoek10.1007/s10482-014-0208-22014Aerobiosis, Anaerobiosis, Bacillus/*classification/*isolation & purification, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Oryza, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysisGenetics
Phylogeny32248281Reclassification of Brevibacterium frigoritolerans DSM 8801(T) as Bacillus frigoritolerans comb. nov. Based on Genome Analysis.Liu GH, Liu B, Wang JP, Che JM, Li PFCurr Microbiol10.1007/s00284-020-01964-x2020Bacillus/classification/*genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Genome, Bacterial, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Whole Genome SequencingGenetics
Phylogeny35604831Reclassification of Brevibacterium frigoritolerans as Peribacillus frigoritolerans comb. nov. based on phylogenomics and multiple molecular synapomorphies.Montecillo JAV, Bae HInt J Syst Evol Microbiol10.1099/ijsem.0.0053892022Bacillus, Bacterial Typing Techniques, Base Composition, *Brevibacterium/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny35812926Peribacillus castrilensis sp. nov.: A Plant-Growth-Promoting and Biocontrol Species Isolated From a River Otter in Castril, Granada, Southern Spain.Rodriguez M, Reina JC, Sampedro I, Llamas I, Martinez-Checa FFront Plant Sci10.3389/fpls.2022.8967282022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3407Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8801)https://www.dsmz.de/collection/catalogue/details/culture/DSM-8801
20209Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM8801.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34108Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10301
55893Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43489)https://www.ccug.se/strain?id=43489
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71491Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14240.1StrainInfo: A central database for resolving microbial strain identifiers
115952Curators of the CIPCollection of Institut Pasteur (CIP 67.20)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2067.20