Strain identifier
BacDive ID: 1832
Type strain: 
Species: Brevibacterium casei
Strain Designation: 393
Strain history: <- G. Funke, 393
NCBI tax ID(s): 33889 (species)
version 8.1 (current version)
General
@ref: 3673
BacDive-ID: 1832
DSM-Number: 9658
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Brevibacterium casei 393 is a mesophilic, Gram-positive bacterium that was isolated from hip joint.
NCBI tax id
- NCBI tax id: 33889
- Matching level: species
strain history
- @ref: 3673
- history: <- G. Funke, 393
doi: 10.13145/bacdive1832.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Brevibacteriaceae
- genus: Brevibacterium
- species: Brevibacterium casei
- full scientific name: Brevibacterium casei Collins et al. 1983
@ref: 3673
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Brevibacteriaceae
genus: Brevibacterium
species: Brevibacterium casei
full scientific name: Brevibacterium casei Collins et al. 1983
strain designation: 393
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 3673
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 3673
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
murein
- @ref: 3673
- murein short key: A31
- type: A1gamma m-Dpm-direct
Isolation, sampling and environmental information
isolation
- @ref: 3673
- sample type: hip joint
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Other | #Bone |
| #Host Body-Site | #Limb | #Joint |
Safety information
risk assessment
- @ref: 3673
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Brevibacterium casei strain FDAARGOS_902
- accession: 33889.21
- assembly level: complete
- database: patric
- NCBI tax ID: 33889
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | yes | 90.213 | no |
| anaerobic | no | 99.492 | no |
| halophile | yes | 71.457 | no |
| spore-forming | no | 92.963 | no |
| glucose-util | yes | 90.875 | no |
| motile | no | 93.116 | no |
| flagellated | no | 96.863 | no |
| aerobic | yes | 95.149 | no |
| thermophile | no | 99.602 | no |
| glucose-ferment | no | 90.524 | no |
External links
@ref: 3673
culture collection no.: DSM 9658
straininfo link
- @ref: 71477
- straininfo: 48655
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3673 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9658) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9658 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 71477 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48655.1 | StrainInfo: A central database for resolving microbial strain identifiers |