Strain identifier
BacDive ID: 1831
Type strain: 
Species: Brevibacterium casei
Strain Designation: 108
Strain history: <- G. Funke, 108
NCBI tax ID(s): 33889 (species)
version 8.1 (current version)
General
@ref: 3672
BacDive-ID: 1831
DSM-Number: 9657
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Brevibacterium casei 108 is a mesophilic, Gram-positive bacterium that was isolated from peritoneal dialysate.
NCBI tax id
- NCBI tax id: 33889
- Matching level: species
strain history
- @ref: 3672
- history: <- G. Funke, 108
doi: 10.13145/bacdive1831.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Brevibacteriaceae
- genus: Brevibacterium
- species: Brevibacterium casei
- full scientific name: Brevibacterium casei Collins et al. 1983
@ref: 3672
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Brevibacteriaceae
genus: Brevibacterium
species: Brevibacterium casei
full scientific name: Brevibacterium casei Collins et al. 1983
strain designation: 108
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 3672
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 3672
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
murein
- @ref: 3672
- murein short key: A31
- type: A1gamma m-Dpm-direct
Isolation, sampling and environmental information
isolation
- @ref: 3672
- sample type: peritoneal dialysate
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host Body-Site | |
| #Host Body Product | #Fluids |
Safety information
risk assessment
- @ref: 3672
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Brevibacterium sanguinis partial 16S rRNA gene, strain DSM 9657
- accession: AJ628352
- length: 1296
- database: ena
- NCBI tax ID: 232444
Genome sequences
- @ref: 66792
- description: Brevibacterium casei strain FDAARGOS_990
- accession: 33889.22
- assembly level: complete
- database: patric
- NCBI tax ID: 33889
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | yes | 89.79 | no |
| anaerobic | no | 99.469 | no |
| halophile | yes | 66.63 | no |
| spore-forming | no | 92.279 | no |
| glucose-util | yes | 88.742 | no |
| motile | no | 92.167 | no |
| flagellated | no | 96.961 | no |
| thermophile | no | 99.56 | yes |
| aerobic | yes | 95.602 | no |
| glucose-ferment | no | 90.531 | no |
External links
@ref: 3672
culture collection no.: DSM 9657
straininfo link
- @ref: 71476
- straininfo: 48654
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3672 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9657) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9657 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 71476 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48654.1 | StrainInfo: A central database for resolving microbial strain identifiers |