Strain identifier
BacDive ID: 1826
Type strain: 
Species: Rhodopseudomonas julia
Strain Designation: KR-11-67
Strain history: <- ATCC <- J. F. Imhoff, KR-11-67 <- E. I. Kompantseva
NCBI tax ID(s): 200617 (species)
version 8.1 (current version)
General
@ref: 4411
BacDive-ID: 1826
DSM-Number: 11549
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Rhodopseudomonas julia KR-11-67 is an anaerobe, mesophilic bacterium that was isolated from sulfur spring.
NCBI tax id
- NCBI tax id: 200617
- Matching level: species
strain history
- @ref: 4411
- history: <- ATCC <- J. F. Imhoff, KR-11-67 <- E. I. Kompantseva
doi: 10.13145/bacdive1826.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Rhodopseudomonas
- species: Rhodopseudomonas julia
- full scientific name: Rhodopseudomonas julia Kompantseva 1993
@ref: 4411
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Nitrobacteraceae
genus: Rhodopseudomonas
species: Rhodopseudomonas julia
full scientific name: Rhodopseudomonas julia Kompantseva 1993
strain designation: KR-11-67
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4411
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://mediadive.dsmz.de/medium/27
- composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 4411
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4411
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4411
- sample type: sulfur spring
- geographic location: Kunashir Island, Golovin Volcano
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_27021.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_187;96_2477;97_3025;98_3794;99_27021&stattab=map
- Last taxonomy: Hyphomicrobiales
- 16S sequence: AY428572
- Sequence Identity:
- Total samples: 2154
- soil counts: 981
- aquatic counts: 820
- animal counts: 275
- plant counts: 78
Safety information
risk assessment
- @ref: 4411
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Rhodopseudomonas julia strain DSM 11549 16S ribosomal RNA gene, partial sequence | AY428572 | 1396 | ena | 200617 |
| 20218 | Rhodopseudomonas julia strain DSM 11549 16S-23S ribosomal RNA intergenic spacer, partial sequence | EU786781 | 801 | ena | 200617 |
| 4411 | Rhodopseudomonas julia gene for 16S rRNA, complete sequence | AB087720 | 1463 | ena | 200617 |
Genome sequences
- @ref: 66792
- description: Rhodopseudomonas julia DSM 11549
- accession: 2926581363
- assembly level: draft
- database: img
- NCBI tax ID: 200617
External links
@ref: 4411
culture collection no.: DSM 11549, ATCC 51105
straininfo link
- @ref: 71471
- straininfo: 42803
literature
- topic: Phylogeny
- Pubmed-ID: 18774253
- title: Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense.
- authors: Urdiain M, Lopez-Lopez A, Gonzalo C, Busse HJ, Langer S, Kampfer P, Rossello-Mora R
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2008.07.002
- year: 2008
- mesh: Alphaproteobacteria/*classification/genetics/growth & development/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis/isolation & purification, Geologic Sediments/microbiology, Heterotrophic Processes, Molecular Sequence Data, Nucleic Acid Hybridization, Phototrophic Processes, RNA, Ribosomal, 16S/genetics, Rhizobiaceae/*classification/genetics/isolation & purification, Rhodopseudomonas/classification/genetics/isolation & purification, Seawater/microbiology, Sequence Analysis, DNA, Species Specificity
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4411 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11549) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11549 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71471 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42803.1 | StrainInfo: A central database for resolving microbial strain identifiers |