Strain identifier
BacDive ID: 182
Type strain:
Species: Schaalia suimastitidis
Strain Designation: SVA 489II
Strain history: CIP <- 2000, CCUG <- G. Holmström,Uppsala, Sweden: strain SVA 489II <- A. Persson, Uppsala, Sweden
NCBI tax ID(s): 1120946 (strain), 121163 (species)
General
@ref: 5987
BacDive-ID: 182
DSM-Number: 15538
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped, animal pathogen
description: Schaalia suimastitidis SVA 489II is a microaerophile, mesophilic, Gram-positive animal pathogen that was isolated from swine deep mammary abscess.
NCBI tax id
NCBI tax id | Matching level |
---|---|
121163 | species |
1120946 | strain |
strain history
@ref | history |
---|---|
5987 | <- CCUG <- G. Holmström <- A. Persson |
123374 | CIP <- 2000, CCUG <- G. Holmström,Uppsala, Sweden: strain SVA 489II <- A. Persson, Uppsala, Sweden |
doi: 10.13145/bacdive182.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Schaalia
- species: Schaalia suimastitidis
- full scientific name: Schaalia suimastitidis (Hoyles et al. 2001) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Actinomyces suimastitidis
@ref: 5987
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Schaalia
species: Schaalia suimastitidis
full scientific name: Schaalia suimastitidis (Hoyles et al. 2001) Nouioui et al. 2018
strain designation: SVA 489II
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
23118 | positive | rod-shaped | no | |
69480 | no | 93.209 | ||
69480 | positive | 100 | ||
123374 | positive | rod-shaped | no |
colony morphology
@ref | incubation period | hemolysis ability |
---|---|---|
54720 | 1-2 days | |
123374 | 1 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5987 | BHI/2 MEDIUM (DSMZ Medium 217) | yes | https://mediadive.dsmz.de/medium/217 | Name: BHI/2 MEDIUM (DSMZ Medium 217) Composition: Brain heart infusion 37.0 g/l Casein hydrolysate 10.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water |
5987 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
23118 | Columbia agar with horse blood | yes | ||
33007 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
123374 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5987 | positive | growth | 37 | mesophilic |
33007 | positive | growth | 37 | mesophilic |
54720 | positive | growth | 37 | mesophilic |
123374 | positive | growth | 25-41 | |
123374 | no | growth | 10 | psychrophilic |
123374 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
5987 | microaerophile | |
23118 | facultative anaerobe | |
54720 | anaerobe | |
54720 | microaerophile | |
69480 | anaerobe | 91.272 |
123374 | facultative anaerobe |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.995
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
123374 | NaCl | no | growth | 0 % |
123374 | NaCl | no | growth | 2 % |
123374 | NaCl | no | growth | 4 % |
123374 | NaCl | no | growth | 6 % |
123374 | NaCl | no | growth | 8 % |
123374 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23118 | 23456 | cyclodextrin | - | builds acid from |
23118 | 18333 | D-arabitol | - | builds acid from |
23118 | 17716 | lactose | - | builds acid from |
23118 | 37684 | mannose | - | builds acid from |
23118 | 6731 | melezitose | - | builds acid from |
23118 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
23118 | 30911 | sorbitol | - | builds acid from |
23118 | 33954 | tagatose | - | builds acid from |
23118 | 27082 | trehalose | - | builds acid from |
23118 | 5291 | gelatin | - | hydrolysis |
23118 | 606565 | hippurate | - | hydrolysis |
23118 | 17632 | nitrate | - | reduction |
23118 | 17634 | D-glucose | + | builds acid from |
23118 | 16634 | raffinose | + | builds acid from |
23118 | 65327 | D-xylose | + | builds acid from |
23118 | 30849 | L-arabinose | + | builds acid from |
23118 | 28053 | melibiose | + | builds acid from |
23118 | 27941 | pullulan | + | builds acid from |
23118 | 33942 | ribose | + | builds acid from |
23118 | 17992 | sucrose | + | builds acid from |
23118 | 4853 | esculin | + | hydrolysis |
23118 | 15688 | acetoin | + | other |
23118 | 17306 | maltose | +/- | builds acid from |
68371 | Potassium 5-ketogluconate | + | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | + | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
123374 | 16947 | citrate | - | carbon source |
123374 | 4853 | esculin | - | hydrolysis |
123374 | 17632 | nitrate | - | reduction |
123374 | 16301 | nitrite | - | reduction |
antibiotic resistance
- @ref: 123374
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 123374
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
123374 | 15688 | acetoin | - | |
123374 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23118 | alkaline phosphatase | +/- | 3.1.3.1 |
23118 | alpha-galactosidase | + | 3.2.1.22 |
23118 | alpha-glucosidase | + | 3.2.1.20 |
23118 | arginine dihydrolase | - | 3.5.3.6 |
23118 | beta-galactosidase | + | 3.2.1.23 |
23118 | beta-glucosidase | + | 3.2.1.21 |
23118 | beta-glucuronidase | - | 3.2.1.31 |
23118 | beta-mannosidase | - | 3.2.1.25 |
23118 | catalase | - | 1.11.1.6 |
23118 | glycyl tryptophan arylamidase | - | |
23118 | N-acetyl-beta-glucosaminidase | +/- | 3.2.1.52 |
23118 | pyrazinamidase | + | 3.5.1.B15 |
23118 | pyroglutamic acid arylamidase | - | |
23118 | tripeptide aminopeptidase | + | 3.4.11.4 |
23118 | urease | - | 3.5.1.5 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
123374 | oxidase | + | |
123374 | beta-galactosidase | - | 3.2.1.23 |
123374 | alcohol dehydrogenase | - | 1.1.1.1 |
123374 | gelatinase | - | |
123374 | amylase | - | |
123374 | DNase | - | |
123374 | caseinase | - | 3.4.21.50 |
123374 | catalase | - | 1.11.1.6 |
123374 | tween esterase | - | |
123374 | gamma-glutamyltransferase | - | 2.3.2.2 |
123374 | lecithinase | - | |
123374 | lipase | - | |
123374 | lysine decarboxylase | - | 4.1.1.18 |
123374 | ornithine decarboxylase | - | 4.1.1.17 |
123374 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
123374 | tryptophan deaminase | - | |
123374 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123374 | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123374 | - | - | +/- | - | - | - | - | - | - | + | + | + | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
5987 | swine deep mammary abscess | Uppsala | Sweden | SWE | Europe | ||
54720 | Swine deep mammary abscess,autopsy,mastitis | Uppsala | Sweden | SWE | Europe | 1998-04-01 | |
123374 | Animal, Swine, deep mammary abscess | Uppsala | Sweden | SWE | Europe | 1998 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Suidae (Pig,Swine) |
#Host Body-Site | #Other | #Abscess |
#Host Body-Site | #Organ | #Mammary gland |
taxonmaps
- @ref: 69479
- File name: preview.99_8260.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_224;96_3796;97_4680;98_6012;99_8260&stattab=map
- Last taxonomy: Schaalia suimastitidis subclade
- 16S sequence: AJ277385
- Sequence Identity:
- Total samples: 1570
- soil counts: 19
- aquatic counts: 10
- animal counts: 1541
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
5987 | yes | 2 | Risk group (German classification) |
123374 | 2 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 5987
- description: Actinomyces suimastitidis partial 16S rRNA gene, strain CCUG 39276
- accession: AJ277385
- length: 1416
- database: ena
- NCBI tax ID: 121163
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Schaalia suimastitidis DSM 15538 | GCA_000429105 | scaffold | ncbi | 1120946 |
66792 | Actinomyces suimastitidis DSM 15538 | 1120946.3 | wgs | patric | 1120946 |
66792 | Actinomyces suimastitidis DSM 15538 | 2523231055 | draft | img | 1120946 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 83 | no |
motile | no | 93.824 | no |
flagellated | no | 97.582 | yes |
gram-positive | yes | 92.831 | no |
anaerobic | no | 54.474 | no |
aerobic | no | 93.607 | yes |
halophile | no | 93.874 | no |
spore-forming | no | 93.895 | no |
thermophile | no | 92.748 | no |
glucose-util | yes | 86.869 | no |
glucose-ferment | yes | 74.978 | no |
External links
@ref: 5987
culture collection no.: DSM 15538, CCUG 39276, CIP 106779, KCTC 19918
straininfo link
- @ref: 69864
- straininfo: 51948
literature
- topic: Phylogeny
- Pubmed-ID: 11491328
- title: Actinomyces suimastitidis sp. nov., isolated from pig mastitis.
- authors: Hoyles L, Falsen E, Holmstrom G, Persson A, Sjoden B, Collins MD
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-51-4-1323
- year: 2001
- mesh: Actinomyces/classification/genetics/*isolation & purification/metabolism/pathogenicity, Actinomycosis/microbiology/*veterinary, Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Female, Mastitis/microbiology/*veterinary, Molecular Sequence Data, Phenotype, Phylogeny, Swine, Swine Diseases/*microbiology, Terminology as Topic
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5987 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15538) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15538 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
23118 | L Hoyles, E Falsen, G Holmström, A Persson, B Sjödén, M D Collins | 10.1099/00207713-51-4-1323 | Actinomyces suimastitidis sp. nov., isolated from pig mastitis. | IJSEM 51: 1323-1326 2001 | 11491328 | |
33007 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18947 | ||||
54720 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 39276) | https://www.ccug.se/strain?id=39276 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69864 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID51948.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123374 | Curators of the CIP | Collection of Institut Pasteur (CIP 106779) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106779 |