Strain identifier

BacDive ID: 182

Type strain: Yes

Species: Schaalia suimastitidis

Strain Designation: SVA 489II

Strain history: CIP <- 2000, CCUG <- G. Holmström,Uppsala, Sweden: strain SVA 489II <- A. Persson, Uppsala, Sweden

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5987

BacDive-ID: 182

DSM-Number: 15538

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped, animal pathogen

description: Schaalia suimastitidis SVA 489II is a microaerophile, mesophilic, Gram-positive animal pathogen that was isolated from swine deep mammary abscess.

NCBI tax id

NCBI tax idMatching level
121163species
1120946strain

strain history

@refhistory
5987<- CCUG <- G. Holmström <- A. Persson
123374CIP <- 2000, CCUG <- G. Holmström,Uppsala, Sweden: strain SVA 489II <- A. Persson, Uppsala, Sweden

doi: 10.13145/bacdive182.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Schaalia
  • species: Schaalia suimastitidis
  • full scientific name: Schaalia suimastitidis (Hoyles et al. 2001) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Actinomyces suimastitidis

@ref: 5987

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Schaalia

species: Schaalia suimastitidis

full scientific name: Schaalia suimastitidis (Hoyles et al. 2001) Nouioui et al. 2018

strain designation: SVA 489II

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
23118positiverod-shapedno
69480no93.209
69480positive100
123374positiverod-shapedno

colony morphology

@refincubation periodhemolysis ability
547201-2 days
1233741

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5987BHI/2 MEDIUM (DSMZ Medium 217)yeshttps://mediadive.dsmz.de/medium/217Name: BHI/2 MEDIUM (DSMZ Medium 217) Composition: Brain heart infusion 37.0 g/l Casein hydrolysate 10.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
5987COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23118Columbia agar with horse bloodyes
33007MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
123374CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
5987positivegrowth37mesophilic
33007positivegrowth37mesophilic
54720positivegrowth37mesophilic
123374positivegrowth25-41
123374nogrowth10psychrophilic
123374nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
5987microaerophile
23118facultative anaerobe
54720anaerobe
54720microaerophile
69480anaerobe91.272
123374facultative anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.995

halophily

@refsaltgrowthtested relationconcentration
123374NaClnogrowth0 %
123374NaClnogrowth2 %
123374NaClnogrowth4 %
123374NaClnogrowth6 %
123374NaClnogrowth8 %
123374NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2311823456cyclodextrin-builds acid from
2311818333D-arabitol-builds acid from
2311817716lactose-builds acid from
2311837684mannose-builds acid from
231186731melezitose-builds acid from
23118320055methyl beta-D-glucopyranoside-builds acid from
2311830911sorbitol-builds acid from
2311833954tagatose-builds acid from
2311827082trehalose-builds acid from
231185291gelatin-hydrolysis
23118606565hippurate-hydrolysis
2311817632nitrate-reduction
2311817634D-glucose+builds acid from
2311816634raffinose+builds acid from
2311865327D-xylose+builds acid from
2311830849L-arabinose+builds acid from
2311828053melibiose+builds acid from
2311827941pullulan+builds acid from
2311833942ribose+builds acid from
2311817992sucrose+builds acid from
231184853esculin+hydrolysis
2311815688acetoin+other
2311817306maltose+/-builds acid from
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose+builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
12337416947citrate-carbon source
1233744853esculin-hydrolysis
12337417632nitrate-reduction
12337416301nitrite-reduction

antibiotic resistance

  • @ref: 123374
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 123374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12337415688acetoin-
12337417234glucose-

enzymes

@refvalueactivityec
23118alkaline phosphatase+/-3.1.3.1
23118alpha-galactosidase+3.2.1.22
23118alpha-glucosidase+3.2.1.20
23118arginine dihydrolase-3.5.3.6
23118beta-galactosidase+3.2.1.23
23118beta-glucosidase+3.2.1.21
23118beta-glucuronidase-3.2.1.31
23118beta-mannosidase-3.2.1.25
23118catalase-1.11.1.6
23118glycyl tryptophan arylamidase-
23118N-acetyl-beta-glucosaminidase+/-3.2.1.52
23118pyrazinamidase+3.5.1.B15
23118pyroglutamic acid arylamidase-
23118tripeptide aminopeptidase+3.4.11.4
23118urease-3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
123374oxidase+
123374beta-galactosidase-3.2.1.23
123374alcohol dehydrogenase-1.1.1.1
123374gelatinase-
123374amylase-
123374DNase-
123374caseinase-3.4.21.50
123374catalase-1.11.1.6
123374tween esterase-
123374gamma-glutamyltransferase-2.3.2.2
123374lecithinase-
123374lipase-
123374lysine decarboxylase-4.1.1.18
123374ornithine decarboxylase-4.1.1.17
123374phenylalanine ammonia-lyase-4.3.1.24
123374tryptophan deaminase-
123374urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123374--++-+---------+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123374--+/-------+++--+---------+--++-------------------+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
5987swine deep mammary abscessUppsalaSwedenSWEEurope
54720Swine deep mammary abscess,autopsy,mastitisUppsalaSwedenSWEEurope1998-04-01
123374Animal, Swine, deep mammary abscessUppsalaSwedenSWEEurope1998

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Other#Abscess
#Host Body-Site#Organ#Mammary gland

taxonmaps

  • @ref: 69479
  • File name: preview.99_8260.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_224;96_3796;97_4680;98_6012;99_8260&stattab=map
  • Last taxonomy: Schaalia suimastitidis subclade
  • 16S sequence: AJ277385
  • Sequence Identity:
  • Total samples: 1570
  • soil counts: 19
  • aquatic counts: 10
  • animal counts: 1541

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
5987yes2Risk group (German classification)
1233742Risk group (French classification)

Sequence information

16S sequences

  • @ref: 5987
  • description: Actinomyces suimastitidis partial 16S rRNA gene, strain CCUG 39276
  • accession: AJ277385
  • length: 1416
  • database: ena
  • NCBI tax ID: 121163

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Schaalia suimastitidis DSM 15538GCA_000429105scaffoldncbi1120946
66792Actinomyces suimastitidis DSM 155381120946.3wgspatric1120946
66792Actinomyces suimastitidis DSM 155382523231055draftimg1120946

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno83no
motileno93.824no
flagellatedno97.582yes
gram-positiveyes92.831no
anaerobicno54.474no
aerobicno93.607yes
halophileno93.874no
spore-formingno93.895no
thermophileno92.748no
glucose-utilyes86.869no
glucose-fermentyes74.978no

External links

@ref: 5987

culture collection no.: DSM 15538, CCUG 39276, CIP 106779, KCTC 19918

straininfo link

  • @ref: 69864
  • straininfo: 51948

literature

  • topic: Phylogeny
  • Pubmed-ID: 11491328
  • title: Actinomyces suimastitidis sp. nov., isolated from pig mastitis.
  • authors: Hoyles L, Falsen E, Holmstrom G, Persson A, Sjoden B, Collins MD
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-4-1323
  • year: 2001
  • mesh: Actinomyces/classification/genetics/*isolation & purification/metabolism/pathogenicity, Actinomycosis/microbiology/*veterinary, Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Female, Mastitis/microbiology/*veterinary, Molecular Sequence Data, Phenotype, Phylogeny, Swine, Swine Diseases/*microbiology, Terminology as Topic
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5987Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15538)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15538
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23118L Hoyles, E Falsen, G Holmström, A Persson, B Sjödén, M D Collins10.1099/00207713-51-4-1323Actinomyces suimastitidis sp. nov., isolated from pig mastitis.IJSEM 51: 1323-1326 200111491328
33007Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18947
54720Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 39276)https://www.ccug.se/strain?id=39276
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69864Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID51948.1StrainInfo: A central database for resolving microbial strain identifiers
123374Curators of the CIPCollection of Institut Pasteur (CIP 106779)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106779