Strain identifier
BacDive ID: 18156
Type strain: 
Species: Solimonas aquatica
Strain history: <- LMG <- W.-M. Chen, National Kaohsiung Marine University
NCBI tax ID(s): 489703 (species)
version 8.1 (current version)
General
@ref: 18123
BacDive-ID: 18156
DSM-Number: 25927
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Solimonas aquatica DSM 25927 is a mesophilic, motile bacterium that was isolated from freshwater spring.
NCBI tax id
- NCBI tax id: 489703
- Matching level: species
strain history
- @ref: 18123
- history: <- LMG <- W.-M. Chen, National Kaohsiung Marine University
doi: 10.13145/bacdive18156.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Nevskiales
- family: Nevskiaceae
- genus: Solimonas
- species: Solimonas aquatica
- full scientific name: Solimonas aquatica Sheu et al. 2011
@ref: 18123
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Nevskiaceae
genus: Solimonas
species: Solimonas aquatica
full scientific name: Solimonas aquatica Sheu et al. 2011
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.367 | |
| 69480 | 99.998 | negative |
Culture and growth conditions
culture medium
- @ref: 18123
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 18123
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.993 |
Isolation, sampling and environmental information
isolation
- @ref: 18123
- sample type: freshwater spring
- geographic location: Kaohsiung
- country: Taiwan
- origin.country: TWN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Spring |
taxonmaps
- @ref: 69479
- File name: preview.99_45955.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_146;96_1648;97_26184;98_33274;99_45955&stattab=map
- Last taxonomy: Solimonas aquatica subclade
- 16S sequence: EU303271
- Sequence Identity:
- Total samples: 340
- soil counts: 43
- aquatic counts: 96
- animal counts: 106
- plant counts: 95
Safety information
risk assessment
- @ref: 18123
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18123
- description: Solimonas aquatica strain NAA16 16S ribosomal RNA gene, partial sequence
- accession: EU303271
- length: 1448
- database: ena
- NCBI tax ID: 489703
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Solimonas aquatica DSM 25927 | GCA_900111015 | scaffold | ncbi | 489703 |
| 66792 | Solimonas aquatica strain DSM 25927 | 489703.3 | wgs | patric | 489703 |
| 66792 | Solimonas aquatica DSM 25927 | 2616644811 | draft | img | 489703 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| glucose-ferment | no | 93.389 | no |
| motile | yes | 86.7 | no |
| flagellated | no | 57.289 | no |
| gram-positive | no | 98.96 | no |
| anaerobic | no | 99.17 | no |
| aerobic | yes | 89.313 | no |
| halophile | no | 95.288 | no |
| spore-forming | no | 94.942 | no |
| thermophile | no | 95.412 | yes |
| glucose-util | yes | 75.854 | no |
External links
@ref: 18123
culture collection no.: DSM 25927, BCRC 17835, LMG 24500, NAA 16
straininfo link
- @ref: 87140
- straininfo: 339902
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20971835 | Proposal of Solimonas aquatica sp. nov., reclassification of Sinobacter flavus Zhou et al. 2008 as Solimonas flava comb. nov. and Singularimonas variicoloris Friedrich and Lipski 2008 as Solimonas variicoloris comb. nov. and emended descriptions of the genus Solimonas and its type species Solimonas soli. | Sheu SY, Cho NT, Arun AB, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.023010-0 | 2010 | Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Fatty Acids/analysis, Flagella/physiology, Fresh Water/*microbiology, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Taiwan, Temperature | Genetics |
| Phylogeny | 24421276 | Solimonas terrae sp. nov., isolated from soil. | Kim SJ, Moon JY, Weon HY, Ahn JH, Chen WM, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.055574-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18123 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25927) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25927 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 87140 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID339902.1 | StrainInfo: A central database for resolving microbial strain identifiers |