Strain identifier
BacDive ID: 18123
Type strain: 
Species: Thermicanus aegyptius
Strain Designation: ET-5b
Strain history: <- H. L. Drake, University of Bayreuth, Department of Ecological Microbiology, Bayreuth, Germany; ET-5b <- H. L. Drake and A. Goessner {1998}
NCBI tax ID(s): 1089548 (strain), 94009 (species)
version 8.1 (current version)
General
@ref: 4822
BacDive-ID: 18123
DSM-Number: 12793
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, motile
description: Thermicanus aegyptius ET-5b is an anaerobe, spore-forming, thermophilic bacterium that was isolated from soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 94009 | species |
| 1089548 | strain |
strain history
- @ref: 4822
- history: <- H. L. Drake, University of Bayreuth, Department of Ecological Microbiology, Bayreuth, Germany; ET-5b <- H. L. Drake and A. Goessner {1998}
doi: 10.13145/bacdive18123.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Thermicanaceae
- genus: Thermicanus
- species: Thermicanus aegyptius
- full scientific name: Thermicanus aegyptius Gößner et al. 2000
@ref: 4822
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacilli, not assigned to family
genus: Thermicanus
species: Thermicanus aegyptius
full scientific name: Thermicanus aegyptius Gößner et al. 2000
strain designation: ET-5b
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.45 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 4822
- name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/311c
- composition: Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c) Composition: D-Fructose 4.97512 g/l NaCl 2.23881 g/l Yeast extract 1.99005 g/l Casitone 1.99005 g/l Na2CO3 0.995025 g/l MgSO4 x 7 H2O 0.497512 g/l NH4Cl 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Biotin 1.99005e-05 g/l Folic acid 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 4822 | positive | growth | 55 | thermophilic | |
| 69480 | thermophilic | 99.74 |
Physiology and metabolism
oxygen tolerance
- @ref: 4822
- oxygen tolerance: anaerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 4822
- sample type: soil
- country: Egypt
- origin.country: EGY
- continent: Africa
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_7000.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_618;96_3284;97_4029;98_5141;99_7000&stattab=map
- Last taxonomy: Thermicanus aegyptius subclade
- 16S sequence: AJ242495
- Sequence Identity:
- Total samples: 656
- soil counts: 53
- aquatic counts: 132
- animal counts: 392
- plant counts: 79
Safety information
risk assessment
- @ref: 4822
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4822
- description: Thermicanus aegyptius 16S rRNA gene, strain ET-5b
- accession: AJ242495
- length: 1426
- database: ena
- NCBI tax ID: 94009
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermicanus aegyptius DSM 12793 | GCA_000510645 | scaffold | ncbi | 1089548 |
| 66792 | Thermicanus aegyptius DSM 12793 | 1089548.3 | wgs | patric | 1089548 |
| 66792 | Thermicanus aegyptius DSM 12793 | 2516493021 | draft | img | 1089548 |
GC content
- @ref: 4822
- GC-content: 50.3
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 91.466 | no |
| flagellated | yes | 70.853 | no |
| gram-positive | yes | 60.97 | no |
| anaerobic | yes | 62.602 | yes |
| halophile | no | 93.824 | no |
| spore-forming | yes | 92.036 | no |
| thermophile | yes | 99.438 | yes |
| glucose-util | yes | 88.908 | no |
| aerobic | no | 82.161 | yes |
| glucose-ferment | no | 87.471 | no |
External links
@ref: 4822
culture collection no.: DSM 12793
straininfo link
- @ref: 87111
- straininfo: 44193
literature
- topic: Phylogeny
- Pubmed-ID: 10543831
- title: Thermicanus aegyptius gen. nov., sp. nov., isolated from oxic soil, a fermentative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica.
- authors: Gossner AS, Devereux R, Ohnemuller N, Acker G, Stackebrandt E, Drake HL
- journal: Appl Environ Microbiol
- DOI: 10.1128/AEM.65.11.5124-5133.1999
- year: 1999
- mesh: Aerobiosis, Anaerobiosis, Cellobiose/metabolism, DNA, Ribosomal/genetics, Egypt, Fermentation, Genes, Bacterial, Gram-Positive Bacteria/*classification/*growth & development/ultrastructure, Hot Temperature, Microscopy, Electron, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, *Soil Microbiology
- topic2: Stress
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4822 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12793) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12793 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 87111 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44193.1 | StrainInfo: A central database for resolving microbial strain identifiers |