Archive BacDiveID:10.13145/bacdive18098.20230509.8.1

Strain identifier

BacDive ID: 18098

Type strain:

Species: Archaeoglobus veneficus

Strain Designation: SNP6

Strain history: <- K.O. Stetter, SNP6

NCBI tax ID(s): 693661 (strain), 58290 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 4232

BacDive-ID: 18098

DSM-Number: 11195

keywords: genome sequence, 16S sequence, Archaea, anaerobe, thermophilic

description: Archaeoglobus veneficus SNP6 is an anaerobe, thermophilic archaeon that was isolated from black smoker wall, 3500m depth.

NCBI tax id

NCBI tax id	Matching level
693661	strain
58290	species

strain history

@ref: 4232
history: <- K.O. Stetter, SNP6

doi: 10.13145/bacdive18098.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/archaea
keyword: phylum/methanobacteriota
domain: Archaea
phylum: Methanobacteriota
class: Archaeoglobi
order: Archaeoglobales
family: Archaeoglobaceae
genus: Archaeoglobus
species: Archaeoglobus veneficus
full scientific name: Archaeoglobus veneficus Huber et al. 1998

@ref: 4232

domain: Archaea

phylum: Euryarchaeota

class: Archaeoglobi

order: Archaeoglobales

family: Archaeoglobaceae

genus: Archaeoglobus

species: Archaeoglobus veneficus

full scientific name: Archaeoglobus veneficus Huber et al. 1998

strain designation: SNP6

type strain: yes

Morphology

multimedia

@ref: 66793
multimedia content: EM_DSM_11195_1.jpg
caption: electron microscopic image
intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

@ref: 4232
name: ARCHAEOGLOBUS VENEFICUS MEDIUM (DSMZ Medium 796)
growth: yes
link: https://mediadive.dsmz.de/medium/796
composition: Name: ARCHAEOGLOBUS VENEFICUS MEDIUM (DSMZ Medium 796) Composition: MgCl2 x 6 H2O 7.12861 g/l NaHCO3 3.98804 g/l Na2SO3 0.997009 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l KCl 0.329013 g/l NH4Cl 0.249252 g/l K2HPO4 x 3 H2O 0.179462 g/l NaCl 0.00997009 g/l MnCl2 x 4 H2O 0.00578265 g/l (NH4)2Ni(SO4)2 0.00199402 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00199402 g/l CaCl2 x 2 H2O 0.000997009 g/l CoCl2 x 6 H2O 0.000997009 g/l FeSO4 x 7 H2O 0.000997009 g/l ZnSO4 x 7 H2O 0.000997009 g/l Sodium resazurin 0.000498504 g/l Na2WO4 x 2 H2O 9.97009e-05 g/l Na2MoO4 x 2 H2O 9.97009e-05 g/l AlK(SO4)2 x 12 H2O 9.97009e-05 g/l H3BO3 9.97009e-05 g/l CuSO4 x 5 H2O 9.97009e-05 g/l Na2SeO3 x 5 H2O 9.97009e-05 g/l Distilled water

culture temp

@ref: 4232
growth: positive
type: growth
temperature: 75
range: thermophilic

Physiology and metabolism

oxygen tolerance

@ref: 4232
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 4232
sample type: black smoker wall, 3500m depth
geographic location: Mid-Atlantic Ridge, Snake Pit hydrothermal vent site

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Condition	#Thermophilic (>45°C)

taxonmaps

@ref: 69479
File name: preview.99_191724.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17856;96_68935;97_91956;98_124963;99_191724&stattab=map
Last taxonomy: Archaeoglobus
16S sequence: AF418181
Sequence Identity:
Total samples: 2
aquatic counts: 2

Safety information

risk assessment

@ref: 4232
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 4232
description: Archaeoglobus veneficus DSM 11195 16S ribosomal RNA gene, partial sequence
accession: AF418181
length: 1451
database: ena
NCBI tax ID: 58290

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Archaeoglobus veneficus SNP6	GCA_000194625	complete	ncbi	693661
66792	Archaeoglobus veneficus SNP6, DSM 11195	2504136002	complete	img	693661
66792	Archaeoglobus veneficus SNP6	693661.9	complete	patric	693661

GC content

@ref: 4232
GC-content: 44.9
method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	80.164	no
flagellated	no	96.181	no
gram-positive	no	97.846	no
anaerobic	yes	98.734	no
aerobic	no	98.09	no
halophile	no	85.932	no
spore-forming	no	95.335	no
glucose-util	yes	74.82	no
thermophile	yes	100	yes
glucose-ferment	no	67.076	no

External links

@ref: 4232

culture collection no.: DSM 11195

straininfo link

@ref: 87086
straininfo: 49048

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
4232	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11195)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-11195
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793	Mukherjee et al.		10.1038/nbt.3886	GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life	35: 676-683 2017	28604660
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
87086	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID49048.1	StrainInfo: A central database for resolving microbial strain identifiers