Strain identifier
BacDive ID: 18089
Type strain: 
Species: Acetatifactor muris
Strain Designation: CT-m2
Strain history: <- T. Clavel, BFLM, TU Munich, Freising-Weihenstephan, Germany; CT-m2 <- T. Clavel {2009}
NCBI tax ID(s): 879566 (species)
version 7.1 (current version)
General
@ref: 17334
BacDive-ID: 18089
DSM-Number: 23669
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Acetatifactor muris CT-m2 is an anaerobe, mesophilic bacterium that was isolated from cecal content of obese mouse.
NCBI tax id
- NCBI tax id: 879566
- Matching level: species
strain history: <- T. Clavel, BFLM, TU Munich, Freising-Weihenstephan, Germany; CT-m2 <- T. Clavel {2009}
doi: 10.13145/bacdive18089.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Acetatifactor
- species: Acetatifactor muris
- full scientific name: Acetatifactor muris Pfeiffer et al. 2013
@ref: 17334
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Acetatifactor
species: Acetatifactor muris
full scientific name: Acetatifactor muris Pfeiffer et al. 2013
strain designation: CT-m2
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 94.096
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 17334 | WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) | yes | https://mediadive.dsmz.de/medium/339a | Name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l D-Glucose 5.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 17334 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104; with strain-specific modifications) Composition: Yeast extract 10.0 g/l Trypticase peptone 5.0 g/l Peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Tween 80 Clarified rumen fluid Distilled water |
culture temp
- @ref: 17334
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 17334 | anaerobe | |
| 69480 | anaerobe | 99.998 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 61.141
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 99.779
Isolation, sampling and environmental information
isolation
- @ref: 17334
- sample type: cecal content of obese mouse
- geographic location: Freising-Weihenstephan
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Muridae (Mouse/Rat) |
| #Host Body Product | #Gastrointestinal tract | #Caecal content |
taxonmaps
- @ref: 69479
- File name: preview.99_15629.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1091;96_7982;97_9602;98_11794;99_15629&stattab=map
- Last taxonomy: Acetatifactor muris subclade
- 16S sequence: HM989805
- Sequence Identity:
- Total samples: 13512
- soil counts: 62
- aquatic counts: 44
- animal counts: 13400
- plant counts: 6
Safety information
risk assessment
- @ref: 17334
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17334
- description: Acetatifactor muris strain CT-m2 16S ribosomal RNA gene, partial sequence
- accession: HM989805
- length: 1376
- database: ena
- NCBI tax ID: 879566
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetatifactor muris DSM 23669 | GCA_024623325 | contig | ncbi | 879566 |
| 66792 | Flavobacteria bacterium BBFL7 BBFL7 | GCA_000153385 | scaffold | patric | 156586 |
GC content
- @ref: 17334
- GC-content: 48.5
- method: high performance liquid chromatography (HPLC)
External links
@ref: 17334
culture collection no.: DSM 23669, ATCC BAA 2170
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/884033 |
| 20218 | http://www.straininfo.net/strains/884032 |
literature
- topic: Phylogeny
- Pubmed-ID: 22659832
- title: Acetatifactor muris gen. nov., sp. nov., a novel bacterium isolated from the intestine of an obese mouse.
- authors: Pfeiffer N, Desmarchelier C, Blaut M, Daniel H, Haller D, Clavel T
- journal: Arch Microbiol
- DOI: 10.1007/s00203-012-0822-1
- year: 2012
- mesh: Animals, Genotype, Gram-Positive Bacteria/*classification/genetics/isolation & purification, Intestines/*microbiology, Male, Mice, Mice, Inbred C57BL, Mice, Obese, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 17334 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23669) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23669 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |