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Strain identifier

BacDive ID: 18089

Type strain:

Species: Acetatifactor muris

Strain Designation: CT-m2

Culture col. no.: DSM 23669, ATCC BAA 2170

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 17334

BacDive-ID: 18089

DSM-Number: 23669

keywords: Bacteria, 16S sequence, genome sequence, anaerobe, mesophilic

description: Acetatifactor muris CT-m2 is an anaerobe, mesophilic bacterium that was isolated from cecal content of obese mouse.

strain history: <- T. Clavel, BFLM, TU Munich, Freising-Weihenstephan, Germany; CT-m2 <- T. Clavel {2009}

doi: 10.13145/bacdive18089.20201210.5

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/firmicutes
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Acetatifactor
species: Acetatifactor muris
full scientific name: Acetatifactor muris Pfeiffer et al. 2013

@ref: 17334

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Lachnospiraceae

genus: Acetatifactor

species: Acetatifactor muris

full scientific name: Acetatifactor muris Pfeiffer et al. 2013

strain designation: CT-m2

type strain: yes

Culture and growth conditions

culture medium

@ref: 17334
name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a), with strain-specific modifications, anaerobic
growth: yes
link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium339a.pdf

culture temp

@ref: 17334
growth: positive
type: growth
temperature: 37
range: mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 17334
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 17334
sample type: cecal content of obese mouse
geographic location: Freising-Weihenstephan
country: Germany
origin.country: DEU
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body Product	#Gastrointestinal tract	#Caecal content

Safety information

risk assessment

@ref: 17334
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 17334
description: Acetatifactor muris strain CT-m2 16S ribosomal RNA gene, partial sequence
accession: HM989805
length: 1376
database: ena
NCBI tax ID: 879566

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Acetatifactor muris GP69	GCA_900248245	contig	ncbi	879566
66792	Acetatifactor muris strain GP69	879566.4	wgs	patric	879566

GC content

@ref: 17334
GC-content: 48.5
method: high performance liquid chromatography (HPLC)

External links

@ref: 17334

culture collection no.: DSM 23669, ATCC BAA 2170

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/884033
20218	http://www.straininfo.net/strains/884032

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
17334	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23669)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-23669
20215	D.Gleim, M.Kracht, N.Weiss et. al.		http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html	Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)