Strain identifier

BacDive ID: 18089

Type strain: Yes

Species: Acetatifactor muris

Strain Designation: CT-m2

Culture col. no.: DSM 23669, ATCC BAA 2170

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General

@ref: 17334

BacDive-ID: 18089

DSM-Number: 23669

keywords: Bacteria, 16S sequence, genome sequence, anaerobe, mesophilic

description: Acetatifactor muris CT-m2 is an anaerobe, mesophilic bacterium that was isolated from cecal content of obese mouse.

strain history: <- T. Clavel, BFLM, TU Munich, Freising-Weihenstephan, Germany; CT-m2 <- T. Clavel {2009}

doi: 10.13145/bacdive18089.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Acetatifactor
  • species: Acetatifactor muris
  • full scientific name: Acetatifactor muris Pfeiffer et al. 2013

@ref: 17334

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Lachnospiraceae

genus: Acetatifactor

species: Acetatifactor muris

full scientific name: Acetatifactor muris Pfeiffer et al. 2013

strain designation: CT-m2

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 17334
  • name: WILKINS-CHALGREN ANAEROBE BROTH (N2/CO2) (DSMZ Medium 339a), with strain-specific modifications, anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium339a.pdf

culture temp

  • @ref: 17334
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 17334
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 17334
  • sample type: cecal content of obese mouse
  • geographic location: Freising-Weihenstephan
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body Product#Gastrointestinal tract#Caecal content

Safety information

risk assessment

  • @ref: 17334
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17334
  • description: Acetatifactor muris strain CT-m2 16S ribosomal RNA gene, partial sequence
  • accession: HM989805
  • length: 1376
  • database: ena
  • NCBI tax ID: 879566

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetatifactor muris GP69GCA_900248245contigncbi879566
66792Acetatifactor muris strain GP69879566.4wgspatric879566

GC content

  • @ref: 17334
  • GC-content: 48.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 17334

culture collection no.: DSM 23669, ATCC BAA 2170

straininfo link

@refpassport
20218http://www.straininfo.net/strains/884033
20218http://www.straininfo.net/strains/884032

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17334Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23669)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23669
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)