Strain identifier
BacDive ID: 18043
Type strain:
Species: Thermaerobacter litoralis
Strain Designation: KW1
Strain history: R. Tanaka KW1.
NCBI tax ID(s): 317015 (species)
General
@ref: 6840
BacDive-ID: 18043
DSM-Number: 17372
keywords: 16S sequence, Bacteria, aerobe, thermophilic, Gram-variable, motile, rod-shaped
description: Thermaerobacter litoralis KW1 is an aerobe, thermophilic, Gram-variable bacterium that was isolated from Sediment sample, coastal hydrothermal beach.
NCBI tax id
- NCBI tax id: 317015
- Matching level: species
strain history
@ref | history |
---|---|
6840 | <- R. Tanaka, Kyoto University;KW1 |
67770 | R. Tanaka KW1. |
doi: 10.13145/bacdive18043.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Syntrophomonadaceae
- genus: Thermaerobacter
- species: Thermaerobacter litoralis
- full scientific name: Thermaerobacter litoralis Tanaka et al. 2006
@ref: 6840
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridia, not assigned to family
genus: Thermaerobacter
species: Thermaerobacter litoralis
full scientific name: Thermaerobacter litoralis Tanaka et al. 2006
strain designation: KW1
type strain: yes
Morphology
cell morphology
- @ref: 31760
- gram stain: variable
- cell length: 01-03 µm
- cell width: 0.3-0.8 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 31760
- production: yes
Culture and growth conditions
culture medium
- @ref: 6840
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6840 | positive | growth | 55 | thermophilic |
31760 | positive | growth | 52-78 | thermophilic |
31760 | positive | optimum | 70 | thermophilic |
67770 | positive | growth | 70 | thermophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31760 | positive | growth | 5.5-9 | alkaliphile |
31760 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 31760
- oxygen tolerance: aerobe
spore formation
- @ref: 31760
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31760 | NaCl | positive | growth | 0-4.5 % |
31760 | NaCl | positive | optimum | 1 % |
observation
- @ref: 31760
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31760 | 30089 | acetate | + | carbon source |
31760 | 16449 | alanine | + | carbon source |
31760 | 35391 | aspartate | + | carbon source |
31760 | 15428 | glycine | + | carbon source |
31760 | 26271 | proline | + | carbon source |
31760 | 15361 | pyruvate | + | carbon source |
31760 | 30031 | succinate | + | carbon source |
31760 | 26986 | threonine | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31760 | catalase | + | 1.11.1.6 |
31760 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
6840 | Sediment sample, coastal hydrothermal beach | Satsuma peninsula, Kagoshima Prefecture | Japan | JPN | Asia |
67770 | Coastal hydrothermal field on the Satsuma Peninsula | Kagoshima | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Sediment |
#Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_148062.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_648;96_3515;97_4313;98_5522;99_148062&stattab=map
- Last taxonomy: Thermaerobacter litoralis
- 16S sequence: AY936496
- Sequence Identity:
- Total samples: 66
- soil counts: 28
- aquatic counts: 10
- animal counts: 24
- plant counts: 4
Safety information
risk assessment
- @ref: 6840
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6840
- description: Thermaerobacter litoralis strain KW1 16S ribosomal RNA gene, partial sequence
- accession: AY936496
- length: 1522
- database: ena
- NCBI tax ID: 317015
GC content
@ref | GC-content | method |
---|---|---|
6840 | 70.8 | |
67770 | 70.8 | high performance liquid chromatography (HPLC) |
External links
@ref: 6840
culture collection no.: DSM 17372, JCM 13210
straininfo link
- @ref: 87032
- straininfo: 297363
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16825625 | Thermaerobacter litoralis sp. nov., a strictly aerobic and thermophilic bacterium isolated from a coastal hydrothermal field. | Tanaka R, Kawaichi S, Nishimura H, Sako Y | Int J Syst Evol Microbiol | 10.1099/ijs.0.64203-0 | 2006 | Aerobiosis, Amino Acids/metabolism, Base Composition, Carboxylic Acids/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Gentian Violet, Gram-Positive Bacteria/*classification/cytology/*isolation & purification/physiology, Growth Inhibitors/pharmacology, Hot Springs/*microbiology, Hydrogen-Ion Concentration, Japan, Microscopy, Electron, Transmission, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phenazines, Phylogeny, Proteins/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/pharmacology, Spores, Bacterial, Temperature, Water Microbiology | Metabolism |
Phylogeny | 19940377 | Thermaerobacter composti sp. nov., a novel extremely thermophilic bacterium isolated from compost. | Yabe S, Kato A, Hazaka M, Yokota A | J Gen Appl Microbiol | 10.2323/jgam.55.323 | 2009 | Bacteria, Aerobic/classification/genetics/*isolation & purification, *Base Composition, DNA, Ribosomal/*analysis, Hot Temperature, Japan, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis/isolation & purification, Soil | Enzymology |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
6840 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17372) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17372 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31760 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28033 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
87032 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297363.1 | StrainInfo: A central database for resolving microbial strain identifiers |