Strain identifier

BacDive ID: 18043

Type strain: Yes

Species: Thermaerobacter litoralis

Strain Designation: KW1

Strain history: R. Tanaka KW1.

NCBI tax ID(s): 317015 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6840

BacDive-ID: 18043

DSM-Number: 17372

keywords: 16S sequence, Bacteria, aerobe, thermophilic, Gram-variable, motile, rod-shaped

description: Thermaerobacter litoralis KW1 is an aerobe, thermophilic, Gram-variable bacterium that was isolated from Sediment sample, coastal hydrothermal beach.

NCBI tax id

  • NCBI tax id: 317015
  • Matching level: species

strain history

@refhistory
6840<- R. Tanaka, Kyoto University;KW1
67770R. Tanaka KW1.

doi: 10.13145/bacdive18043.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Syntrophomonadaceae
  • genus: Thermaerobacter
  • species: Thermaerobacter litoralis
  • full scientific name: Thermaerobacter litoralis Tanaka et al. 2006

@ref: 6840

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridia, not assigned to family

genus: Thermaerobacter

species: Thermaerobacter litoralis

full scientific name: Thermaerobacter litoralis Tanaka et al. 2006

strain designation: KW1

type strain: yes

Morphology

cell morphology

  • @ref: 31760
  • gram stain: variable
  • cell length: 01-03 µm
  • cell width: 0.3-0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 31760
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 6840
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6840positivegrowth55thermophilic
31760positivegrowth52-78thermophilic
31760positiveoptimum70thermophilic
67770positivegrowth70thermophilic

culture pH

@refabilitytypepHPH range
31760positivegrowth5.5-9alkaliphile
31760positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 31760
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31760
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31760NaClpositivegrowth0-4.5 %
31760NaClpositiveoptimum1 %

observation

  • @ref: 31760
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3176030089acetate+carbon source
3176016449alanine+carbon source
3176035391aspartate+carbon source
3176015428glycine+carbon source
3176026271proline+carbon source
3176015361pyruvate+carbon source
3176030031succinate+carbon source
3176026986threonine+carbon source

enzymes

@refvalueactivityec
31760catalase+1.11.1.6
31760cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6840Sediment sample, coastal hydrothermal beachSatsuma peninsula, Kagoshima PrefectureJapanJPNAsia
67770Coastal hydrothermal field on the Satsuma PeninsulaKagoshimaJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_148062.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_648;96_3515;97_4313;98_5522;99_148062&stattab=map
  • Last taxonomy: Thermaerobacter litoralis
  • 16S sequence: AY936496
  • Sequence Identity:
  • Total samples: 66
  • soil counts: 28
  • aquatic counts: 10
  • animal counts: 24
  • plant counts: 4

Safety information

risk assessment

  • @ref: 6840
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6840
  • description: Thermaerobacter litoralis strain KW1 16S ribosomal RNA gene, partial sequence
  • accession: AY936496
  • length: 1522
  • database: ena
  • NCBI tax ID: 317015

GC content

@refGC-contentmethod
684070.8
6777070.8high performance liquid chromatography (HPLC)

External links

@ref: 6840

culture collection no.: DSM 17372, JCM 13210

straininfo link

  • @ref: 87032
  • straininfo: 297363

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16825625Thermaerobacter litoralis sp. nov., a strictly aerobic and thermophilic bacterium isolated from a coastal hydrothermal field.Tanaka R, Kawaichi S, Nishimura H, Sako YInt J Syst Evol Microbiol10.1099/ijs.0.64203-02006Aerobiosis, Amino Acids/metabolism, Base Composition, Carboxylic Acids/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Gentian Violet, Gram-Positive Bacteria/*classification/cytology/*isolation & purification/physiology, Growth Inhibitors/pharmacology, Hot Springs/*microbiology, Hydrogen-Ion Concentration, Japan, Microscopy, Electron, Transmission, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phenazines, Phylogeny, Proteins/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/pharmacology, Spores, Bacterial, Temperature, Water MicrobiologyMetabolism
Phylogeny19940377Thermaerobacter composti sp. nov., a novel extremely thermophilic bacterium isolated from compost.Yabe S, Kato A, Hazaka M, Yokota AJ Gen Appl Microbiol10.2323/jgam.55.3232009Bacteria, Aerobic/classification/genetics/*isolation & purification, *Base Composition, DNA, Ribosomal/*analysis, Hot Temperature, Japan, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis/isolation & purification, SoilEnzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6840Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17372)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17372
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31760Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2803328776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87032Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297363.1StrainInfo: A central database for resolving microbial strain identifiers