Strain identifier
BacDive ID: 18036
Type strain:
Species: Sulfobacillus acidophilus
Strain Designation: NAL
Strain history: <- P. R. Norris, strain NAL
NCBI tax ID(s): 679936 (strain), 53633 (species)
General
@ref: 3909
BacDive-ID: 18036
DSM-Number: 10332
keywords: genome sequence, 16S sequence, Bacteria, thermophilic, Gram-positive
description: Sulfobacillus acidophilus NAL is a thermophilic, Gram-positive bacterium that was isolated from coal spoil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
53633 | species |
679936 | strain |
strain history
- @ref: 3909
- history: <- P. R. Norris, strain NAL
doi: 10.13145/bacdive18036.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Sulfobacillaceae
- genus: Sulfobacillus
- species: Sulfobacillus acidophilus
- full scientific name: Sulfobacillus acidophilus Norris et al. 1996
@ref: 3909
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Clostridiales
family: Alicyclobacillaceae
genus: Sulfobacillus
species: Sulfobacillus acidophilus
full scientific name: Sulfobacillus acidophilus Norris et al. 1996
strain designation: NAL
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.5
multimedia
- @ref: 66793
- multimedia content: EM_DSM_10332_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3909 | FERROUS SULFATE/YEAST EXTRACT MEDIUM (DSMZ Medium 1190) | yes | https://mediadive.dsmz.de/medium/1190 | Name: FERROUS SULFATE/YEAST EXTRACT MEDIUM (DSMZ Medium 1190) Composition: FeSO4 x 7 H2O 5.56 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.45 g/l Yeast extract 0.2 g/l Na2SO4 x 10 H2O 0.15 g/l KH2PO4 0.05 g/l KCl 0.05 g/l Ca(NO3)2 x 4 H2O 0.014 g/l Distilled water |
3909 | ACIDIMICROBIUM MEDIUM (DSMZ Medium 709) | yes | https://mediadive.dsmz.de/medium/709 | Name: ACIDIMICROBIUM MEDIUM (DSMZ Medium 709) Composition: MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.4 g/l Yeast extract 0.25 g/l K2HPO4 0.2 g/l KCl 0.1 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range | confidence |
---|---|---|---|---|---|
3909 | positive | growth | 45 | thermophilic | |
69480 | thermophilic | 99.999 |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.208
Isolation, sampling and environmental information
isolation
- @ref: 3909
- sample type: coal spoil
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Waste | #Solid waste |
#Environmental | #Terrestrial | #Geologic |
Safety information
risk assessment
- @ref: 3909
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Sulfobacillus acidophilus gene for 16S rRNA | AB089842 | 1525 | ena | 679936 |
3909 | Thermococcus alcaliphilus partial 16S rRNA gene, strain DSM 10322 | AJ298872 | 1306 | ena | 139207 |
3909 | Sulfobacillus acidophilus DSM 10332 16S ribosomal RNA, partial sequence | NR_074758 | 1531 | nuccore | 679936 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sulfobacillus acidophilus DSM 10332 | GCA_000237975 | complete | ncbi | 679936 |
66792 | Sulfobacillus acidophilus DSM 10332 | 679936.5 | complete | patric | 679936 |
66792 | Sulfobacillus acidophilus DSM 10332 | 679936.13 | plasmid | patric | 679936 |
66792 | Sulfobacillus acidophilus NAL, DSM 10332 | 2506520015 | complete | img | 679936 |
GC content
- @ref: 3909
- GC-content: 56.2
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 88 | no |
motile | yes | 74.892 | no |
flagellated | no | 84.374 | no |
gram-positive | yes | 60.137 | no |
anaerobic | no | 93.427 | no |
aerobic | no | 50 | no |
halophile | no | 94.887 | no |
spore-forming | yes | 70.27 | no |
thermophile | yes | 99.487 | no |
glucose-util | yes | 85.735 | no |
glucose-ferment | no | 83.745 | no |
External links
@ref: 3909
culture collection no.: DSM 10332
straininfo link
- @ref: 87025
- straininfo: 43844
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 25149523 | Newly identified thermostable esterase from Sulfobacillus acidophilus: properties and performance in phthalate ester degradation. | Zhang XY, Fan X, Qiu YJ, Li CY, Xing S, Zheng YT, Xu JH | Appl Environ Microbiol | 10.1128/AEM.02072-14 | 2014 | Amino Acid Sequence, Bacteria/chemistry/*enzymology/genetics/*metabolism, Bacterial Proteins/*chemistry/genetics/*metabolism, Biodegradation, Environmental, Cloning, Molecular, Enzyme Stability, Esterases/*chemistry/genetics/*metabolism, Esters/*metabolism, Kinetics, Models, Molecular, Molecular Sequence Data, Phthalic Acids, Sequence Alignment, Substrate Specificity, Temperature | Metabolism |
Biotechnology | 26267113 | Sulfobacillus thermosulfidooxidans strain Cutipay enhances chalcopyrite bioleaching under moderate thermophilic conditions in the presence of chloride ion. | Bobadilla-Fazzini RA, Cortes MP, Maass A, Parada P | AMB Express | 10.1186/s13568-014-0084-1 | 2014 | ||
Phylogeny | 34236956 | Sulfobacillus harzensis sp. nov., an acidophilic bacterium inhabiting mine tailings from a polymetallic mine. | Zhang R, Hedrich S, Jin D, Breuker A, Schippers A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004871 | 2021 | Bacterial Typing Techniques, Base Composition, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Germany, *Mining, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3909 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10332) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10332 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
87025 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43844.1 | StrainInfo: A central database for resolving microbial strain identifiers |