Strain identifier

BacDive ID: 18034

Type strain: Yes

Species: Sulfobacillus thermosulfidooxidans

Strain Designation: AT-1 (=1A)

Strain history: <- G. Karavaiko, AT-1(=1A)

NCBI tax ID(s): 929705 (strain), 28034 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3533

BacDive-ID: 18034

DSM-Number: 9293

keywords: genome sequence, 16S sequence, Bacteria, thermophilic

description: Sulfobacillus thermosulfidooxidans AT-1 is a thermophilic bacterium that was isolated from spontaneously heated ore deposit.

NCBI tax id

NCBI tax idMatching level
929705strain
28034species

strain history

  • @ref: 3533
  • history: <- G. Karavaiko, AT-1(=1A)

doi: 10.13145/bacdive18034.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Sulfobacillaceae
  • genus: Sulfobacillus
  • species: Sulfobacillus thermosulfidooxidans
  • full scientific name: Sulfobacillus thermosulfidooxidans Golovacheva and Karavaiko 1991

@ref: 3533

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Clostridiales

family: Alicyclobacillaceae

genus: Sulfobacillus

species: Sulfobacillus thermosulfidooxidans

full scientific name: Sulfobacillus thermosulfidooxidans Golovacheva and Karavaiko 1991

strain designation: AT-1 (=1A)

type strain: yes

Morphology

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_9293_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3533FERROUS SULFATE/YEAST EXTRACT MEDIUM (DSMZ Medium 1190)yeshttps://mediadive.dsmz.de/medium/1190Name: FERROUS SULFATE/YEAST EXTRACT MEDIUM (DSMZ Medium 1190) Composition: FeSO4 x 7 H2O 5.56 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.45 g/l Yeast extract 0.2 g/l Na2SO4 x 10 H2O 0.15 g/l KH2PO4 0.05 g/l KCl 0.05 g/l Ca(NO3)2 x 4 H2O 0.014 g/l Distilled water
3533SULFOBACILLUS MEDIUM (DSMZ Medium 665)yeshttps://mediadive.dsmz.de/medium/665Name: SULFOBACILLUS MEDIUM (DSMZ Medium 665) Composition: FeSO4 x 7 H2O 43.2909 g/l (NH4)2SO4 2.93829 g/l MgSO4 x 7 H2O 0.489716 g/l K2HPO4 0.489716 g/l KCl 0.0979431 g/l Ca(NO3)2 0.00979431 g/l Yeast extract 0.00391773 g/l H2SO4 Distilled water

culture temp

  • @ref: 3533
  • growth: positive
  • type: growth
  • temperature: 50
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 3533
  • sample type: spontaneously heated ore deposit
  • geographic location: Nikolaev copper-zinc-pyrite deposit
  • country: Kazakhstan
  • origin.country: KAZ
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Geologic

taxonmaps

  • @ref: 69479
  • File name: preview.99_412.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15916;96_279;97_308;98_342;99_412&stattab=map
  • Last taxonomy: Sulfobacillus thermosulfidooxidans
  • 16S sequence: X91080
  • Sequence Identity:
  • Total samples: 10405
  • soil counts: 321
  • aquatic counts: 534
  • animal counts: 9472
  • plant counts: 78

Safety information

risk assessment

  • @ref: 3533
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Sulfobacillus thermosulfidooxidans gene for 16S rRNAAB0898441500ena929705
20218S.thermosulfidooxidans 16S ribosomal RNAX910801438ena929705
20218Sulfobacillus thermosulfidooxidans 16S ribosomal RNA, partial sequenceAF137501536ena929705

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sulfobacillus thermosulfidooxidans DSM 9293GCA_900176145scaffoldncbi929705
66792Sulfobacillus thermosulfidooxidans DSM 9293 strain DSM 9293929705.9wgspatric929705
66792Sulfobacillus thermosulfidooxidans AT-1, DSM 92932506210005draftimg929705

GC content

  • @ref: 3533
  • GC-content: 53.6-53.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes69.69no
flagellatedno84.321no
gram-positiveyes58.937no
anaerobicno93.269no
aerobicyes63.078no
halophileno93.144no
spore-formingyes74.46no
thermophileyes97.145no
glucose-utilyes85.715no
glucose-fermentno87.126no

External links

@ref: 3533

culture collection no.: DSM 9293, VKM B-1269

straininfo link

  • @ref: 87023
  • straininfo: 48612

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics1689675Sulfobacillus thermosulfidooxidans: a new lineage of bacterial evolution?Karavajko GI, Bulygina ES, Tsaplina IA, Bogdanova TI, Chumakov KMFEBS Lett10.1016/0014-5793(90)80623-q1990Base Sequence, *Biological Evolution, Gram-Positive Bacteria/*genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, RNA, Bacterial/*genetics, RNA, Ribosomal/*genetics, RNA, Ribosomal, 5S/*geneticsPhylogeny
Phylogeny15774689Reclassification of 'Sulfobacillus thermosulfidooxidans subsp. thermotolerans' strain K1 as Alicyclobacillus tolerans sp. nov. and Sulfobacillus disulfidooxidans Dufresne et al. 1996 as Alicyclobacillus disulfidooxidans comb. nov., and emended description of the genus Alicyclobacillus.Karavaiko GI, Bogdanova TI, Tourova TP, Kondrat'eva TF, Tsaplina IA, Egorova MA, Krasil'nikova EN, Zakharchuk LMInt J Syst Evol Microbiol10.1099/ijs.0.63300-02005DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Rods/chemistry/*classification/*genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Enzymology27682113Sulfur Oxygenase Reductase (Sor) in the Moderately Thermoacidophilic Leaching Bacteria: Studies in Sulfobacillus thermosulfidooxidans and Acidithiobacillus caldus.Janosch C, Remonsellez F, Sand W, Vera MMicroorganisms10.3390/microorganisms30407072015
Metabolism32916217Effect of inoculum history, growth substrates and yeast extract addition on inhibition of Sulfobacillus thermosulfidooxidans by NaCl.Huynh D, Kaschabek SR, Schlomann MRes Microbiol10.1016/j.resmic.2020.08.0042020Bioreactors/*microbiology, Clostridiales/drug effects/growth & development/*metabolism, Copper/*metabolism, Ferrous Compounds/metabolism, Iron/metabolism, Osmotic Fragility/physiology, Oxidation-Reduction, Oxygen/metabolism, Oxygen Consumption/physiology, Salt Tolerance/*physiology, Sodium Chloride/*pharmacology, Sulfides/metabolism, Tetrathionic Acid/metabolismPathogenicity
Biotechnology33013767Effect of Sodium Chloride on Pyrite Bioleaching and Initial Attachment by Sulfobacillus thermosulfidooxidans.Huynh D, Norambuena J, Boldt C, Kaschabek SR, Levican G, Schlomann MFront Microbiol10.3389/fmicb.2020.021022020

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3533Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9293)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9293
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87023Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48612.1StrainInfo: A central database for resolving microbial strain identifiers