Strain identifier
BacDive ID: 18034
Type strain:
Species: Sulfobacillus thermosulfidooxidans
Strain Designation: AT-1 (=1A)
Strain history: <- G. Karavaiko, AT-1(=1A)
NCBI tax ID(s): 929705 (strain), 28034 (species)
General
@ref: 3533
BacDive-ID: 18034
DSM-Number: 9293
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Sulfobacillus thermosulfidooxidans AT-1 is a thermophilic bacterium that was isolated from spontaneously heated ore deposit.
NCBI tax id
NCBI tax id | Matching level |
---|---|
929705 | strain |
28034 | species |
strain history
- @ref: 3533
- history: <- G. Karavaiko, AT-1(=1A)
doi: 10.13145/bacdive18034.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Sulfobacillaceae
- genus: Sulfobacillus
- species: Sulfobacillus thermosulfidooxidans
- full scientific name: Sulfobacillus thermosulfidooxidans Golovacheva and Karavaiko 1991
@ref: 3533
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Clostridiales
family: Alicyclobacillaceae
genus: Sulfobacillus
species: Sulfobacillus thermosulfidooxidans
full scientific name: Sulfobacillus thermosulfidooxidans Golovacheva and Karavaiko 1991
strain designation: AT-1 (=1A)
type strain: yes
Morphology
multimedia
- @ref: 66793
- multimedia content: EM_DSM_9293_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3533 | FERROUS SULFATE/YEAST EXTRACT MEDIUM (DSMZ Medium 1190) | yes | https://mediadive.dsmz.de/medium/1190 | Name: FERROUS SULFATE/YEAST EXTRACT MEDIUM (DSMZ Medium 1190) Composition: FeSO4 x 7 H2O 5.56 g/l MgSO4 x 7 H2O 0.5 g/l (NH4)2SO4 0.45 g/l Yeast extract 0.2 g/l Na2SO4 x 10 H2O 0.15 g/l KH2PO4 0.05 g/l KCl 0.05 g/l Ca(NO3)2 x 4 H2O 0.014 g/l Distilled water |
3533 | SULFOBACILLUS MEDIUM (DSMZ Medium 665) | yes | https://mediadive.dsmz.de/medium/665 | Name: SULFOBACILLUS MEDIUM (DSMZ Medium 665) Composition: FeSO4 x 7 H2O 43.2909 g/l (NH4)2SO4 2.93829 g/l MgSO4 x 7 H2O 0.489716 g/l K2HPO4 0.489716 g/l KCl 0.0979431 g/l Ca(NO3)2 0.00979431 g/l Yeast extract 0.00391773 g/l H2SO4 Distilled water |
culture temp
- @ref: 3533
- growth: positive
- type: growth
- temperature: 50
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 3533
- sample type: spontaneously heated ore deposit
- geographic location: Nikolaev copper-zinc-pyrite deposit
- country: Kazakhstan
- origin.country: KAZ
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Geologic
taxonmaps
- @ref: 69479
- File name: preview.99_412.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15916;96_279;97_308;98_342;99_412&stattab=map
- Last taxonomy: Sulfobacillus thermosulfidooxidans
- 16S sequence: X91080
- Sequence Identity:
- Total samples: 10405
- soil counts: 321
- aquatic counts: 534
- animal counts: 9472
- plant counts: 78
Safety information
risk assessment
- @ref: 3533
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Sulfobacillus thermosulfidooxidans gene for 16S rRNA | AB089844 | 1500 | ena | 929705 |
20218 | S.thermosulfidooxidans 16S ribosomal RNA | X91080 | 1438 | ena | 929705 |
20218 | Sulfobacillus thermosulfidooxidans 16S ribosomal RNA, partial sequence | AF137501 | 536 | ena | 929705 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sulfobacillus thermosulfidooxidans DSM 9293 | GCA_900176145 | scaffold | ncbi | 929705 |
66792 | Sulfobacillus thermosulfidooxidans DSM 9293 strain DSM 9293 | 929705.9 | wgs | patric | 929705 |
66792 | Sulfobacillus thermosulfidooxidans AT-1, DSM 9293 | 2506210005 | draft | img | 929705 |
GC content
- @ref: 3533
- GC-content: 53.6-53.9
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 69.69 | no |
flagellated | no | 84.321 | no |
gram-positive | yes | 58.937 | no |
anaerobic | no | 93.269 | no |
aerobic | yes | 63.078 | no |
halophile | no | 93.144 | no |
spore-forming | yes | 74.46 | no |
thermophile | yes | 97.145 | no |
glucose-util | yes | 85.715 | no |
glucose-ferment | no | 87.126 | no |
External links
@ref: 3533
culture collection no.: DSM 9293, VKM B-1269
straininfo link
- @ref: 87023
- straininfo: 48612
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Genetics | 1689675 | Sulfobacillus thermosulfidooxidans: a new lineage of bacterial evolution? | Karavajko GI, Bulygina ES, Tsaplina IA, Bogdanova TI, Chumakov KM | FEBS Lett | 10.1016/0014-5793(90)80623-q | 1990 | Base Sequence, *Biological Evolution, Gram-Positive Bacteria/*genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, RNA, Bacterial/*genetics, RNA, Ribosomal/*genetics, RNA, Ribosomal, 5S/*genetics | Phylogeny |
Phylogeny | 15774689 | Reclassification of 'Sulfobacillus thermosulfidooxidans subsp. thermotolerans' strain K1 as Alicyclobacillus tolerans sp. nov. and Sulfobacillus disulfidooxidans Dufresne et al. 1996 as Alicyclobacillus disulfidooxidans comb. nov., and emended description of the genus Alicyclobacillus. | Karavaiko GI, Bogdanova TI, Tourova TP, Kondrat'eva TF, Tsaplina IA, Egorova MA, Krasil'nikova EN, Zakharchuk LM | Int J Syst Evol Microbiol | 10.1099/ijs.0.63300-0 | 2005 | DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Rods/chemistry/*classification/*genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Enzymology | 27682113 | Sulfur Oxygenase Reductase (Sor) in the Moderately Thermoacidophilic Leaching Bacteria: Studies in Sulfobacillus thermosulfidooxidans and Acidithiobacillus caldus. | Janosch C, Remonsellez F, Sand W, Vera M | Microorganisms | 10.3390/microorganisms3040707 | 2015 | ||
Metabolism | 32916217 | Effect of inoculum history, growth substrates and yeast extract addition on inhibition of Sulfobacillus thermosulfidooxidans by NaCl. | Huynh D, Kaschabek SR, Schlomann M | Res Microbiol | 10.1016/j.resmic.2020.08.004 | 2020 | Bioreactors/*microbiology, Clostridiales/drug effects/growth & development/*metabolism, Copper/*metabolism, Ferrous Compounds/metabolism, Iron/metabolism, Osmotic Fragility/physiology, Oxidation-Reduction, Oxygen/metabolism, Oxygen Consumption/physiology, Salt Tolerance/*physiology, Sodium Chloride/*pharmacology, Sulfides/metabolism, Tetrathionic Acid/metabolism | Pathogenicity |
Biotechnology | 33013767 | Effect of Sodium Chloride on Pyrite Bioleaching and Initial Attachment by Sulfobacillus thermosulfidooxidans. | Huynh D, Norambuena J, Boldt C, Kaschabek SR, Levican G, Schlomann M | Front Microbiol | 10.3389/fmicb.2020.02102 | 2020 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3533 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9293) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9293 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
87023 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48612.1 | StrainInfo: A central database for resolving microbial strain identifiers |