Strain identifier

BacDive ID: 17991

Type strain: Yes

Species: Helcococcus ovis

Strain Designation: S840-96-1, S-840-96-1

Strain history: CIP <- 1999, CCUG <- M.D. Collins, IFR, Reading, UK <- G. Foster, SAC Veterinary Services, Inverness, UK: strain S-840-96-1

NCBI tax ID(s): 72026 (species)

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General

@ref: 15683

BacDive-ID: 17991

DSM-Number: 21504

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, coccus-shaped, animal pathogen

description: Helcococcus ovis S840-96-1 is an anaerobe, mesophilic, Gram-positive animal pathogen that was isolated from sheep lung, liver and spleen, adult male, post-mortem.

NCBI tax id

  • NCBI tax id: 72026
  • Matching level: species

strain history

@refhistory
15683<- CCUG <- M. D. Collins, IFR, Reading, UK <- G. Foster, SAC Veterinary Services, Inverness, UK
121474CIP <- 1999, CCUG <- M.D. Collins, IFR, Reading, UK <- G. Foster, SAC Veterinary Services, Inverness, UK: strain S-840-96-1

doi: 10.13145/bacdive17991.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Helcococcus
  • species: Helcococcus ovis
  • full scientific name: Helcococcus ovis Collins et al. 1999

@ref: 15683

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptoniphilaceae

genus: Helcococcus

species: Helcococcus ovis

full scientific name: Helcococcus ovis Collins et al. 1999

strain designation: S840-96-1, S-840-96-1

type strain: yes

Morphology

cell morphology

  • @ref: 121474
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 121474

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15683COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
39490MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
121474CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperature
15683positivegrowth37
39490positivegrowth37
53670positivegrowth37
121474positivegrowth30-41
121474nogrowth10
121474nogrowth25
121474nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15683anaerobe
53670anaerobe
53670microaerophile
121474anaerobe

halophily

  • @ref: 121474
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1214744853esculin-hydrolysis
121474606565hippurate-hydrolysis
12147417632nitrate-reduction
12147416301nitrite-reduction
68371Potassium 5-ketogluconate-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

metabolite tests

  • @ref: 121474
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382lipase (C 14)-
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
121474oxidase-
121474beta-galactosidase-3.2.1.23
121474alcohol dehydrogenase-1.1.1.1
121474catalase-1.11.1.6
121474gamma-glutamyltransferase-2.3.2.2
121474lysine decarboxylase-4.1.1.18
121474ornithine decarboxylase-4.1.1.17
68382alpha-mannosidase-3.2.1.24

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121474-+-+-+----++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121474---------+/---+/-------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
15683sheep lung, liver and spleen, adult male, post-mortemScotlandUnited KingdomGBREurope
53670Sheep lung,liver and spleen,adult male,post-mortemInvernessUnited KingdomGBREurope1996
121474Animal, Sheep, lungInvernessUnited KingdomGBREurope1996

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Organ#Liver
#Host Body-Site#Oral cavity and airways#Lung
#Host Body-Site#Organ#Spleen

taxonmaps

  • @ref: 69479
  • File name: preview.99_19243.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_612;96_9819;97_11836;98_14546;99_19243&stattab=map
  • Last taxonomy: Helcococcus ovis subclade
  • 16S sequence: Y16279
  • Sequence Identity:
  • Total samples: 6855
  • soil counts: 744
  • aquatic counts: 468
  • animal counts: 5527
  • plant counts: 116

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15683yes2Risk group (German classification)
1214741Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15683
  • description: Helcococcus sp. 16S rRNA gene, strain CCUG 37441
  • accession: Y16279
  • length: 1423
  • database: nuccore
  • NCBI tax ID: 72026

GC content

  • @ref: 15683
  • GC-content: 29

External links

@ref: 15683

culture collection no.: DSM 21504, ATCC BAA-59, CCUG 37441, CIP 106312, CCM 4944, DSM 16935

straininfo link

  • @ref: 86978
  • straininfo: 44276

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10555322Helcococcus ovis sp. nov., a gram-positive organism from sheep.Collins MD, Falsen E, Foster G, Monasterio LR, Dominguez L, Fernandez-Garazabal JFInt J Syst Bacteriol10.1099/00207713-49-4-14291999Animals, Bacterial Typing Techniques, Catalase/metabolism, DNA, Ribosomal/genetics, Genes, rRNA, Gram-Positive Bacterial Infections/microbiology/*veterinary, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sheep, Sheep Diseases/*microbiology, Streptococcaceae/*classification/*genetics/isolation & purificationGenetics
Phylogeny35224069Biological Characteristics and Pathogenicity of Helcococcus ovis Isolated From Clinical Bovine Mastitis in a Chinese Dairy Herd.Liu K, Deng Z, Zhang L, Gu X, Liu G, Liu Y, Chen P, Gao J, Han B, Qu WFront Vet Sci10.3389/fvets.2021.7564382022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15683Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21504)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21504
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39490Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18429
53670Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 37441)https://www.ccug.se/strain?id=37441
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86978Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44276.1StrainInfo: A central database for resolving microbial strain identifiers
121474Curators of the CIPCollection of Institut Pasteur (CIP 106312)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106312