Strain identifier

BacDive ID: 17987

Type strain: No

Species: Finegoldia magna

Strain history: CIP <- 1993, J. Wanderscheid, Baxter Diagnostics Inc., Paris Nord II, France, Peptococcus magnus

NCBI tax ID(s): 334413 (strain), 1260 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 8842

BacDive-ID: 17987

DSM-Number: 20472

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive

description: Finegoldia magna CCUG 12548 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from abdominal wound.

NCBI tax id

NCBI tax idMatching level
334413strain
1260species

strain history

@refhistory
8842<- ATCC <- Wadsworth Anaerobic Bact. Res. Lab., WAL 2508
384591993, J. Wanderscheid, Baxter Diagnostics Inc., Paris Nord II, France, Peptococcus magnus
120749CIP <- 1993, J. Wanderscheid, Baxter Diagnostics Inc., Paris Nord II, France, Peptococcus magnus

doi: 10.13145/bacdive17987.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Finegoldia
  • species: Finegoldia magna
  • full scientific name: Finegoldia magna (Prévot 1933) Murdoch and Shah 2000

  • synonyms

    @refsynonym
    20215Diplococcus magnus
    20215Peptostreptococcus magnus
    20215Peptococcus magnus

@ref: 8842

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptoniphilaceae

genus: Finegoldia

species: Finegoldia magna

full scientific name: Finegoldia magna (Prévot 1933) Murdoch and Shah 2000

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive99.999
120749positivecoccus-shapedno

colony morphology

  • @ref: 120749

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8842PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
38459MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
120749CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
8842positivegrowth37mesophilic
38459positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
8842anaerobe
69480anaerobe99.3
120749anaerobe

spore formation

@refspore formationconfidence
69481no96
69480no99.993

murein

  • @ref: 8842
  • murein short key: A12.01
  • type: A3alpha' L-Lys-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12074917108D-arabinose-degradation
12074915824D-fructose-degradation
12074917634D-glucose-degradation
12074916024D-mannose-degradation
12074917716lactose-degradation
12074917306maltose-degradation
12074917992sucrose-degradation
1207494853esculin-hydrolysis
12074917632nitrate-reduction
12074916301nitrite-reduction
6838016199urea-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838017632nitrate-reduction
6838027897tryptophan-energy source
6838129016arginine+hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate+hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
1207496909metronidazoleyesyesno
1207490129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesyesno

metabolite production

@refChebi-IDmetaboliteproduction
12074935581indoleno
6838035581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6838035581indole-

enzymes

@refvalueactivityec
68381urease+3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase+3.5.3.6
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase+3.4.11.1
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380urease-3.5.1.5
120749oxidase-
120749beta-galactosidase-3.2.1.23
120749gelatinase-
120749catalase-1.11.1.6
120749gamma-glutamyltransferase-2.3.2.2
120749urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120749-----+----++--------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8842-+/----------------+-+-++++++-+
45744-+----------+---++-++++++++-+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
45744+------------------+--+--------+

Isolation, sampling and environmental information

isolation

@refsample type
8842abdominal wound
45744Abdominal wound
120749Human, Abdominal wound

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Other#Abdomen
#Host Body-Site#Other#Wound

taxonmaps

  • @ref: 69479
  • File name: preview.99_1256.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_210;96_728;97_851;98_992;99_1256&stattab=map
  • Last taxonomy: Finegoldia magna subclade
  • 16S sequence: AB109770
  • Sequence Identity:
  • Total samples: 108576
  • soil counts: 2103
  • aquatic counts: 3898
  • animal counts: 101814
  • plant counts: 761

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
88422Risk group (German classification)
1207491Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Finegoldia magna rrnA operon (16S rRNA, 23S rRNA, 5S rRNA), complete sequenceAB1097697317ena334413
20218Finegoldia magna rrnB operon (16S rRNA, 23S rRNA, 5S rRNA, tRNA-Ile), complete sequenceAB1097707544ena334413

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Finegoldia magna ATCC 29328GCA_000010185completencbi334413
66792Finegoldia magna ATCC 29328334413.6completepatric334413
66792Finegoldia magna ATCC 29328334413.15plasmidpatric334413
66792Finegoldia magna ATCC 29328641522627completeimg334413
66792Finegoldia magna strain FDAARGOS_15571260.196completepatric1260
66792Finegoldia magna strain FDAARGOS_15571260.191completepatric1260

GC content

  • @ref: 8842
  • GC-content: 31.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno96no
motileno91.894no
flagellatedno97.615no
gram-positiveyes94.103no
anaerobicyes99.487yes
halophileno66.306no
spore-formingno88.635no
thermophileno95.72yes
glucose-utilyes78.917no
aerobicno98.694yes
glucose-fermentyes63.629no

External links

@ref: 8842

culture collection no.: CCUG 12548, DSM 20472, ATCC 29328, WAL 2508, CIP 103666

straininfo link

  • @ref: 86974
  • straininfo: 92830

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity3972999Evaluation of broth microdilution susceptibility results for anaerobic organisms by use of a rapid direct colony inoculum.Mangels JI, Lindberg LHJ Clin Microbiol10.1128/jcm.21.2.269-272.19851985Bacteria, Anaerobic/*drug effects, Humans, Microbial Sensitivity Tests/*methods, Quality Control, Tetracycline/pharmacology
Genetics12023074Physical and genetic map of the Finegoldia magna (formerly Peptostreptococcus magnus) ATCC 29328 genome.Todo K, Goto T, Miyamoto K, Akimoto SFEMS Microbiol Lett10.1111/j.1574-6968.2002.tb11156.x2002Chromosome Mapping, Chromosomes, Bacterial, DNA, Bacterial/genetics, DNA, Circular/genetics, *Genome, Bacterial, Peptostreptococcus/*genetics, Polymorphism, Restriction Fragment Length
Genetics14695451Bacterial artificial chromosome library of Finegoldia magna ATCC 29328 for genetic mapping and comparative genomics.Goto T, Todo K, Miyamoto K, Akimoto SMicrobiol Immunol10.1111/j.1348-0421.2003.tb03461.x2003Chromosome Mapping/*methods, Chromosomes, Artificial, Bacterial/*genetics, Cloning, Molecular, Clostridium tetani/genetics, Contig Mapping/methods, DNA, Bacterial/chemistry/isolation & purification, Genes, Bacterial, *Genomic Library, Genomics/*methods, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Peptostreptococcus/*genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Virulence Factors/geneticsEnzymology
Pathogenicity15053317Comparative analysis of the four rRNA operons in Finegoldia magna ATCC29328.Todo K, Goto T, Honda A, Tamura M, Miyamoto K, Fujita S, Akimoto SSyst Appl Microbiol10.1078/0723-2020-002472004Base Sequence, Chromosomes, Artificial, Bacterial, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, Humans, Molecular Sequence Data, Nucleic Acid Conformation, Peptostreptococcus/*genetics, Polymerase Chain Reaction, RNA, Ribosomal, 16S/chemistry/genetics, RNA, Ribosomal, 23S/chemistry/genetics, Sequence Alignment, rRNA Operon/*geneticsGenetics
Genetics18263572Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen.Goto T, Yamashita A, Hirakawa H, Matsutani M, Todo K, Ohshima K, Toh H, Miyamoto K, Kuhara S, Hattori M, Shimizu T, Akimoto SDNA Res10.1093/dnares/dsm0302008Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Base Sequence, Chromosomes, Bacterial, *Genome, Bacterial, Molecular Sequence Data, Peptostreptococcus/*genetics/ultrastructure, Plasmids/geneticsMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8842Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20472)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20472
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38459Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15488
45744Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 12548)https://www.ccug.se/strain?id=12548
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86974Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92830.1StrainInfo: A central database for resolving microbial strain identifiers
120749Curators of the CIPCollection of Institut Pasteur (CIP 103666)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103666