Strain identifier
BacDive ID: 17979
Type strain:
Species: Carboxydocella thermautotrophica
Strain Designation: 41
Strain history: <- T. Sokolova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; 41 <- T. Sokolova {1998}
NCBI tax ID(s): 178899 (species)
General
@ref: 4693
BacDive-ID: 17979
DSM-Number: 12326
keywords: 16S sequence, Bacteria, anaerobe, thermophilic
description: Carboxydocella thermautotrophica 41 is an anaerobe, thermophilic bacterium that was isolated from cyanobacterial mat, mud and water.
NCBI tax id
- NCBI tax id: 178899
- Matching level: species
strain history
- @ref: 4693
- history: <- T. Sokolova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; 41 <- T. Sokolova {1998}
doi: 10.13145/bacdive17979.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Carboxydocellaceae
- genus: Carboxydocella
- species: Carboxydocella thermautotrophica
- full scientific name: Carboxydocella thermautotrophica Sokolova et al. 2002
@ref: 4693
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridia, not assigned to family
genus: Carboxydocella
species: Carboxydocella thermautotrophica
full scientific name: Carboxydocella thermautotrophica Sokolova et al. 2002
strain designation: 41
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4693
- name: CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507)
- growth: yes
- link: https://mediadive.dsmz.de/medium/507
- composition: Name: CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507; with strain-specific modifications) Composition: NaHCO3 1.0 g/l Na2S x 9 H2O 0.7 g/l MgCl2 x 6 H2O 0.52 g/l KCl 0.33 g/l KH2PO4 0.33 g/l NH4Cl 0.33 g/l CaCl2 x 2 H2O 0.29 g/l Yeast extract 0.05 g/l Na2-EDTA x 2 H2O 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l Pyridoxine hydrochloride 0.0001 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l (DL)-alpha-Lipoic acid 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-06 g/l Selenite-tungstate solution Distilled water
culture temp
- @ref: 4693
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4693
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4693
- sample type: cyanobacterial mat, mud and water
- geographic location: Kamchatka Peninsula, Geyzer Valley
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | |
#Environmental | #Microbial community | #Microbial mat |
#Environmental | #Terrestrial | #Mud (Sludge) |
#Host | #Microbial | #Bacteria |
Safety information
risk assessment
- @ref: 4693
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4693
- description: Carboxydocella thermoautotrophica 16S ribosomal RNA gene, partial sequence
- accession: AY061974
- length: 1455
- database: ena
- NCBI tax ID: 178899
GC content
- @ref: 4693
- GC-content: 46
External links
@ref: 4693
culture collection no.: DSM 12326, VKM B-2282
straininfo link
- @ref: 86966
- straininfo: 100583
literature
- topic: Phylogeny
- Pubmed-ID: 12508854
- title: Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring.
- authors: Sokolova TG, Kostrikina NA, Chernyh NA, Tourova TP, Kolganova TV, Bonch-Osmolovskaya EA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-6-1961
- year: 2002
- mesh: Bacteria, Anaerobic/*classification/genetics/*isolation & purification/metabolism, Base Composition, Base Sequence, Carbon Monoxide/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Gram-Positive Rods/*classification/genetics/*isolation & purification/metabolism, Hot Temperature, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4693 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12326) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12326 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
86966 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100583.1 | StrainInfo: A central database for resolving microbial strain identifiers |