Strain identifier

BacDive ID: 17979

Type strain: Yes

Species: Carboxydocella thermautotrophica

Strain Designation: 41

Strain history: <- T. Sokolova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; 41 <- T. Sokolova {1998}

NCBI tax ID(s): 178899 (species)

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General

@ref: 4693

BacDive-ID: 17979

DSM-Number: 12326

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Carboxydocella thermautotrophica 41 is an anaerobe, thermophilic bacterium that was isolated from cyanobacterial mat, mud and water.

NCBI tax id

  • NCBI tax id: 178899
  • Matching level: species

strain history

  • @ref: 4693
  • history: <- T. Sokolova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; 41 <- T. Sokolova {1998}

doi: 10.13145/bacdive17979.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Carboxydocellaceae
  • genus: Carboxydocella
  • species: Carboxydocella thermautotrophica
  • full scientific name: Carboxydocella thermautotrophica Sokolova et al. 2002

@ref: 4693

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridia, not assigned to family

genus: Carboxydocella

species: Carboxydocella thermautotrophica

full scientific name: Carboxydocella thermautotrophica Sokolova et al. 2002

strain designation: 41

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 4693
  • name: CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/507
  • composition: Name: CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507; with strain-specific modifications) Composition: NaHCO3 1.0 g/l Na2S x 9 H2O 0.7 g/l MgCl2 x 6 H2O 0.52 g/l KCl 0.33 g/l KH2PO4 0.33 g/l NH4Cl 0.33 g/l CaCl2 x 2 H2O 0.29 g/l Yeast extract 0.05 g/l Na2-EDTA x 2 H2O 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l Pyridoxine hydrochloride 0.0001 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l (DL)-alpha-Lipoic acid 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-06 g/l Selenite-tungstate solution Distilled water

culture temp

  • @ref: 4693
  • growth: positive
  • type: growth
  • temperature: 55
  • range: thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4693
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4693
  • sample type: cyanobacterial mat, mud and water
  • geographic location: Kamchatka Peninsula, Geyzer Valley
  • country: Russia
  • origin.country: RUS
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Microbial community#Microbial mat
#Environmental#Terrestrial#Mud (Sludge)
#Host#Microbial#Bacteria

Safety information

risk assessment

  • @ref: 4693
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4693
  • description: Carboxydocella thermoautotrophica 16S ribosomal RNA gene, partial sequence
  • accession: AY061974
  • length: 1455
  • database: ena
  • NCBI tax ID: 178899

GC content

  • @ref: 4693
  • GC-content: 46

External links

@ref: 4693

culture collection no.: DSM 12326, VKM B-2282

straininfo link

  • @ref: 86966
  • straininfo: 100583

literature

  • topic: Phylogeny
  • Pubmed-ID: 12508854
  • title: Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring.
  • authors: Sokolova TG, Kostrikina NA, Chernyh NA, Tourova TP, Kolganova TV, Bonch-Osmolovskaya EA
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-6-1961
  • year: 2002
  • mesh: Bacteria, Anaerobic/*classification/genetics/*isolation & purification/metabolism, Base Composition, Base Sequence, Carbon Monoxide/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Gram-Positive Rods/*classification/genetics/*isolation & purification/metabolism, Hot Temperature, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
4693Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12326)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12326
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
86966Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100583.1StrainInfo: A central database for resolving microbial strain identifiers