Strain identifier

BacDive ID: 17975

Type strain: Yes

Species: Anaerococcus octavius

Strain Designation: Davey 1(Hare group VIII)

Strain history: <- DSM <- NCTC <- R Hare, strain Davey 1(Hare group VIII)

NCBI tax ID(s): 1161098 (strain), 54007 (species)

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General

@ref: 4432

BacDive-ID: 17975

DSM-Number: 11663

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, coccus-shaped, human pathogen

description: Anaerococcus octavius Davey 1 is an anaerobe, mesophilic, coccus-shaped human pathogen that was isolated from normal nose.

NCBI tax id

NCBI tax idMatching level
54007species
1161098strain

strain history

@refhistory
4432<- NCTC <- R. Hare, strain Davey 1 (Hare group VIII)
67771<- DSM <- NCTC <- R Hare, strain Davey 1(Hare group VIII)

doi: 10.13145/bacdive17975.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Anaerococcus
  • species: Anaerococcus octavius
  • full scientific name: Anaerococcus octavius (Murdoch et al. 1997) Ezaki et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Peptostreptococcus octavius

@ref: 4432

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptoniphilaceae

genus: Anaerococcus

species: Anaerococcus octavius

full scientific name: Anaerococcus octavius (Murdoch et al. 1997) Ezaki et al. 2001

strain designation: Davey 1(Hare group VIII)

type strain: yes

Morphology

cell morphology

@refcell shapegram stain
67771coccus-shaped
67771positive

Culture and growth conditions

culture medium

  • @ref: 4432
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
4432positivegrowth37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
4432anaerobe
67771anaerobe

murein

  • @ref: 4432
  • murein short key: A12.03
  • type: A4alpha' L-Lys-Gly-D-Asp

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
4432normal noseLondonUnited KingdomGBREurope
67771From normal noseLondonUnited KingdomGBREurope

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Organ
  • Cat3: #Nose

taxonmaps

  • @ref: 69479
  • File name: preview.99_9833.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_172;96_4661;97_5645;98_7282;99_9833&stattab=map
  • Last taxonomy: Anaerococcus octavius subclade
  • 16S sequence: NR_026360
  • Sequence Identity:
  • Total samples: 12071
  • soil counts: 68
  • aquatic counts: 276
  • animal counts: 11636
  • plant counts: 91

Safety information

risk assessment

  • @ref: 4432
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
4432P.octavius 16S rRNA geneY078411407ena1161098
67771Anaerococcus octavius NCTC 9810 16S ribosomal RNA, partial sequenceNR_0263601407nuccore1161098

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaerococcus octavius NCTC9810GCA_900445265contigncbi54007
66792Anaerococcus octavius strain NCTC981054007.13wgspatric54007
66792Anaerococcus octavius NCTC 98102512047049draftimg1161098
66792Anaerococcus octavius NCTC 98102808606682draftimg1161098

GC content

@refGC-contentmethod
443228thermal denaturation, midpoint method (Tm)
6777128.0thermal denaturation, midpoint method (Tm)

External links

@ref: 4432

culture collection no.: DSM 11663, KCTC 5964, NCTC 9810

straininfo link

  • @ref: 86962
  • straininfo: 49148

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4432Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11663)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11663
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86962Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49148.1StrainInfo: A central database for resolving microbial strain identifiers