Strain identifier

BacDive ID: 17951

Type strain: Yes

Species: Thiomonas perometabolis

Strain history: CIP <- 1995, IFO <- 1987, IAM <- ATCC <- J. London: strain THI 023

NCBI tax ID(s): 928 (species)

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General

@ref: 7530

BacDive-ID: 17951

DSM-Number: 18570

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Thiomonas perometabolis DSM 18570 is a mesophilic, Gram-negative, motile bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 928
  • Matching level: species

strain history

@refhistory
7530<- CIP <- IFO <- IAM <- ATCC <- J. London, National Institute of Health, Bethesda, Md., USA; THI 023
67770IAM 12132 <-- ATCC 23370 <-- J. London THI 023.
121684CIP <- 1995, IFO <- 1987, IAM <- ATCC <- J. London: strain THI 023

doi: 10.13145/bacdive17951.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Thiomonas
  • species: Thiomonas perometabolis
  • full scientific name: Thiomonas perometabolis (London and Rittenberg 1967) Moreira and Amils 1997

  • synonyms

    • @ref: 20215
    • synonym: Thiobacillus perometabolis

@ref: 7530

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Thiomonas

species: Thiomonas perometabolis

full scientific name: Thiomonas perometabolis (London and Rittenberg 1967) Moreira and Amils 1997

type strain: yes

Morphology

cell morphology

  • @ref: 121684
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7530THIOMONAS DELICATA MEDIUM (DSMZ Medium 1037)yeshttps://mediadive.dsmz.de/medium/1037Name: THIOMONAS DELICATA MEDIUM (DSMZ Medium 1037) Composition: Agar 15.0 g/l Na2S2O3 x 5 H2O 5.0 g/l Na2HPO4 4.5 g/l KH2PO4 1.5 g/l Na-aspartate 1.0 g/l Yeast extract 1.0 g/l NH4Cl 0.3 g/l MgSO4 x 7 H2O 0.1 g/l Distilled water
35670MEDIUM 126 - for ThiomonasyesDistilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.100 g);Agar (15.000 g);Yeast extract (5.000 g);Potassium di-hydrogen phosphate (1.500 g);Ammonium chloride (0.300 g);Sodium thiosulphate pentahydrate (5.000 g);Di Sodium hydrogen
121684CIP Medium 126yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=126

culture temp

@refgrowthtypetemperaturerange
7530positivegrowth30mesophilic
35670positivegrowth30mesophilic
67770positivegrowth30mesophilic
121684positivegrowth30-37mesophilic
121684nogrowth10psychrophilic
121684nogrowth41thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12168417632nitrate-reduction
12168416301nitrite-reduction

antibiotic resistance

  • @ref: 121684
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 121684
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
121684oxidase-
121684alcohol dehydrogenase-1.1.1.1
121684gelatinase-
121684catalase-1.11.1.6
121684lysine decarboxylase-4.1.1.18
121684ornithine decarboxylase-4.1.1.17
121684urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7530soilCalifornia, Los Angeles areaUSAUSANorth America
67770Soil
121684Environment, Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3097.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_1616;97_1933;98_2377;99_3097&stattab=map
  • Last taxonomy: Thiomonas
  • 16S sequence: AY455808
  • Sequence Identity:
  • Total samples: 3123
  • soil counts: 388
  • aquatic counts: 2269
  • animal counts: 312
  • plant counts: 154

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
75301Risk group (German classification)
1216841Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Thiomonas perometabolis partial 16S-23S ITS1, strain DSM 18570FR693372392ena928
20218Thiobacillus perometabolis 16S rRNA sequenceM79421281ena928
20218Thiobacillus perometabolis 16S rRNA sequenceM79422355ena928
20218Thiobacillus perometabolis 16S rRNA sequenceM79423245ena928
7530Thiomonas perometabolis 16S ribosomal RNA gene, partial sequenceAY4558081380ena928

External links

@ref: 7530

culture collection no.: DSM 18570, ATCC 23370, CIP 104403, IAM 12132, IFO 14565, LMG 8564, THI 023, JCM 20426, NBRC 14565

straininfo link

  • @ref: 86938
  • straininfo: 5030

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19605731Thiomonas bhubaneswarensis sp. nov., an obligately mixotrophic, moderately thermophilic, thiosulfate-oxidizing bacterium.Panda SK, Jyoti V, Bhadra B, Nayak KC, Shivaji S, Rainey FA, Das SKInt J Syst Evol Microbiol10.1099/ijs.0.007120-02009Aerobiosis, Bacterial Typing Techniques, Base Composition, Betaproteobacteria/*classification/genetics/*isolation & purification/physiology, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids, Geologic Sediments/*microbiology, Hot Springs, Hydrogen-Ion Concentration, India, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Thiosulfates/*metabolismMetabolism
Phylogeny20173005Thiomonas islandica sp. nov., a moderately thermophilic, hydrogen- and sulfur-oxidizing betaproteobacterium isolated from a hot spring.Vesteinsdottir H, Reynisdottir DB, Orlygsson JInt J Syst Evol Microbiol10.1099/ijs.0.015511-02010Aerobiosis, Base Composition, Betaproteobacteria/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hot Springs/*microbiology, Hydrogen/*metabolism, Hydrogen-Ion Concentration, Iceland, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Organic Chemicals/metabolism, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfur/*metabolism, Temperature, Thiosulfates/metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7530Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18570)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18570
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35670Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16307
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86938Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5030.1StrainInfo: A central database for resolving microbial strain identifiers
121684Curators of the CIPCollection of Institut Pasteur (CIP 104403)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104403