Strain identifier
BacDive ID: 17948
Type strain:
Species: Thiomonas delicata
Strain Designation: TuT-1
Strain history: <- NBRC <- IFO <- IAM <- Katayama-Fujimura & Kuraishi; THI 091 <- Mizoguchi; TuT-1
NCBI tax ID(s): 364030 (species)
General
@ref: 7231
BacDive-ID: 17948
DSM-Number: 17897
keywords: 16S sequence, Bacteria, mesophilic
description: Thiomonas delicata TuT-1 is a mesophilic bacterium that was isolated from mine water.
NCBI tax id
- NCBI tax id: 364030
- Matching level: species
strain history
- @ref: 7231
- history: <- NBRC <- IFO <- IAM <- Katayama-Fujimura & Kuraishi; THI 091 <- Mizoguchi; TuT-1
doi: 10.13145/bacdive17948.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Thiomonas
- species: Thiomonas delicata
- full scientific name: Thiomonas delicata (Katayama-Fujimura et al. 1984 ex Mizoguchi et al. 1976) Kelly and Wood 2006
synonyms
@ref synonym 20215 Thiomonas cuprina 20215 Thiobacillus cuprinus 20215 Thiobacillus delicatus
@ref: 7231
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Thiomonas
species: Thiomonas delicata
full scientific name: Thiomonas delicata (Katayama-Fujimura et al. 1984) Kelly and Wood 2006 emend. Katayama et al. 2006 emend. Battaglia-Brunet et al. 2011
strain designation: TuT-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7231
- name: THIOMONAS DELICATA MEDIUM (DSMZ Medium 1037)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1037
- composition: Name: THIOMONAS DELICATA MEDIUM (DSMZ Medium 1037) Composition: Agar 15.0 g/l Na2S2O3 x 5 H2O 5.0 g/l Na2HPO4 4.5 g/l KH2PO4 1.5 g/l Na-aspartate 1.0 g/l Yeast extract 1.0 g/l NH4Cl 0.3 g/l MgSO4 x 7 H2O 0.1 g/l Distilled water
culture temp
- @ref: 7231
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7231
- sample type: mine water
- geographic location: Akita, Kosaka Mine
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Other | #Mine |
#Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_10992.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_320;97_356;98_8190;99_10992&stattab=map
- Last taxonomy: Thiomonas delicata subclade
- 16S sequence: AB245481
- Sequence Identity:
- Total samples: 1096
- soil counts: 383
- aquatic counts: 558
- animal counts: 148
- plant counts: 7
Safety information
risk assessment
- @ref: 7231
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Thiobacillus delicatus gene for 16S rRNA, partial sequence
- accession: AB245481
- length: 1456
- database: ena
- NCBI tax ID: 364030
GC content
- @ref: 7231
- GC-content: 66.5
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 7231
culture collection no.: DSM 17897, IAM 12624, IFO 14566, KCTC 2851, NBRC 14566, THI 091
straininfo link
- @ref: 86936
- straininfo: 5029
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17082389 | Confirmation of Thiomonas delicata (formerly Thiobacillus delicatus) as a distinct species of the genus Thiomonas Moreira and Amils 1997 with comments on some species currently assigned to the genus. | Katayama Y, Uchino Y, Wood AP, Kelly DP | Int J Syst Evol Microbiol | 10.1099/ijs.0.64299-0 | 2006 | Arsenites/metabolism, Base Composition, Betaproteobacteria/chemistry/*classification/cytology/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Genes, rRNA, Hydrogen-Ion Concentration, Iron/metabolism, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Organic Chemicals/metabolism, Phylogeny, Quinones/analysis/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sulfur Compounds/metabolism, Temperature | Metabolism |
Phylogeny | 21216915 | Proposal that the arsenite-oxidizing organisms Thiomonas cuprina and 'Thiomonas arsenivorans' be reclassified as strains of Thiomonas delicata, and emended description of Thiomonas delicata. | Battaglia-Brunet F, El Achbouni H, Quemeneur M, Hallberg KB, Kelly DP, Joulian C | Int J Syst Evol Microbiol | 10.1099/ijs.0.023408-0 | 2011 | Arsenites/*metabolism, Betaproteobacteria/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Mining, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7231 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17897) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17897 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
86936 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID5029.1 | StrainInfo: A central database for resolving microbial strain identifiers |