Strain identifier
BacDive ID: 17944
Type strain: 
Species: Tepidimonas aquatica
Strain Designation: CLN-1
Strain history: <- M. S. da Costa; CLN-1
NCBI tax ID(s): 247482 (species)
version 8.1 (current version)
General
@ref: 5566
BacDive-ID: 17944
DSM-Number: 14833
keywords: genome sequence, 16S sequence, Bacteria, aerobe, thermophilic
description: Tepidimonas aquatica CLN-1 is an aerobe, thermophilic bacterium that was isolated from hot water cylinder.
NCBI tax id
- NCBI tax id: 247482
- Matching level: species
strain history
- @ref: 5566
- history: <- M. S. da Costa; CLN-1
doi: 10.13145/bacdive17944.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Tepidimonas
- species: Tepidimonas aquatica
- full scientific name: Tepidimonas aquatica Freitas et al. 2003
@ref: 5566
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Tepidimonas
species: Tepidimonas aquatica
full scientific name: Tepidimonas aquatica Freitas et al. 2003
strain designation: CLN-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5566
- name: CASTENHOLZ MEDIUM (DSMZ Medium 86)
- growth: yes
- link: https://mediadive.dsmz.de/medium/86
- composition: Name: CASTENHOLZ MEDIUM (DSMZ Medium 86) Composition: Yeast extract 1.0 g/l Tryptone 1.0 g/l NaNO3 0.689 g/l Na2HPO4 x 2 H2O 0.14 g/l KNO3 0.103 g/l MgSO4 x 7 H2O 0.1 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.06 g/l NaCl 0.008 g/l MnSO4 x H2O 0.0022 g/l H3BO3 0.0005 g/l ZnSO4 x 7 H2O 0.0005 g/l FeCl3 x 6 H2O 0.00047 g/l CoCl2 x 6 H2O 4.6e-05 g/l CuSO4 x 5 H2O 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5566 | positive | growth | 50 | thermophilic |
| 58313 | positive | growth | 42 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 58313
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 5566 | hot water cylinder | Coimbra | Portugal | PRT | Europe |
| 58313 | Hot water cylinder | Portugal | PRT | Europe |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Built environment |
| #Environmental | #Aquatic |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 5566
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Tepidimonas aquatica strain CLN-1 16S ribosomal RNA gene, partial sequence
- accession: AY324139
- length: 1499
- database: ena
- NCBI tax ID: 247482
Genome sequences
- @ref: 66792
- description: Tepidimonas aquatica CLN-1
- accession: GCA_007556585
- assembly level: contig
- database: ncbi
- NCBI tax ID: 247482
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.436 | no |
| flagellated | yes | 80.874 | no |
| gram-positive | no | 98.896 | no |
| anaerobic | no | 95.739 | yes |
| aerobic | yes | 75.416 | yes |
| halophile | no | 88.305 | no |
| spore-forming | no | 95.851 | no |
| glucose-util | no | 76.574 | no |
| thermophile | yes | 94.49 | yes |
| glucose-ferment | no | 85.574 | no |
External links
@ref: 5566
culture collection no.: DSM 14833, CCUG 48750, ATCC BAA 469
straininfo link
- @ref: 86932
- straininfo: 28127
literature
- topic: Phylogeny
- Pubmed-ID: 14529180
- title: Tepidimonas aquatica sp. nov., a new slightly thermophilic beta-proteobacterium isolated from a hot water tank.
- authors: Freitas M, Rainey FA, Nobre MF, Silvestre AJ, da Costa MS
- journal: Syst Appl Microbiol
- DOI: 10.1078/072320203322497400
- year: 2003
- mesh: Aerobiosis, Amino Acids/metabolism, Base Composition, Betaproteobacteria/*classification/cytology/*isolation & purification/physiology, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry, Fatty Acids/analysis, Genes, rRNA, Lipids/analysis, Molecular Sequence Data, Phylogeny, Portugal, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Temperature, Tetrathionic Acid/metabolism, Thiosulfates/metabolism, *Water Microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5566 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14833) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14833 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 58313 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 48750) | https://www.ccug.se/strain?id=48750 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 86932 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID28127.1 | StrainInfo: A central database for resolving microbial strain identifiers |