Strain identifier
BacDive ID: 17939
Type strain: 
Species: Sphaerotilus montanus
Strain Designation: ST
Strain history: <- H. Hippe, Germany; ST
NCBI tax ID(s): 522889 (species)
version 8.1 (current version)
General
@ref: 282
BacDive-ID: 17939
DSM-Number: 565
keywords: 16S sequence, Bacteria, mesophilic
description: Sphaerotilus montanus ST is a mesophilic bacterium that was isolated from pond water.
NCBI tax id
- NCBI tax id: 522889
- Matching level: species
strain history
- @ref: 282
- history: <- H. Hippe, Germany; ST
doi: 10.13145/bacdive17939.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Sphaerotilus
- species: Sphaerotilus montanus
- full scientific name: Sphaerotilus montanus Gridneva et al. 2011
@ref: 282
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Sphaerotilus
species: Sphaerotilus montanus
full scientific name: Sphaerotilus montanus Gridneva et al. 2011
strain designation: ST
type strain: no
Culture and growth conditions
culture medium
- @ref: 282
- name: SPHAEROTILUS MEDIUM (DSMZ Medium 51)
- growth: yes
- link: https://mediadive.dsmz.de/medium/51
- composition: Name: SPHAEROTILUS MEDIUM (DSMZ Medium 51) Composition: Agar 15.0 g/l Beef extract 5.0 g/l Distilled water
culture temp
- @ref: 282
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 282
- sample type: pond water
- geographic location: Göttingen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Pond (small)
taxonmaps
- @ref: 69479
- File name: preview.99_45012.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_2507;97_3061;98_32653;99_45012&stattab=map
- Last taxonomy: Sphaerotilus montanus
- 16S sequence: GU591794
- Sequence Identity:
- Total samples: 3141
- soil counts: 365
- aquatic counts: 2138
- animal counts: 553
- plant counts: 85
Safety information
risk assessment
- @ref: 282
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Sphaerotilus natans 16S ribosomal RNA (16S rRNA) | L33977 | 317 | ena | 34103 |
| 282 | Sphaerotilus montanus strain 565 16S ribosomal RNA gene, partial sequence | GU591794 | 1407 | ena | 522889 |
External links
@ref: 282
culture collection no.: DSM 565, ATCC 29329
straininfo link
- @ref: 86927
- straininfo: 39471
literature
- topic: Phylogeny
- Pubmed-ID: 20495027
- title: Taxonomic investigation of representatives of the genus Sphaerotilus: descriptions of Sphaerotilus montanus sp. nov., Sphaerotilus hippei sp. nov., Sphaerotilus natans subsp. natans subsp. nov. and Sphaerotilus natans subsp. sulfidivorans subsp. nov., and an emended description of the genus Sphaerotilus.
- authors: Gridneva E, Chernousova E, Dubinina G, Akimov V, Kuever J, Detkova E, Grabovich M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.023887-0
- year: 2010
- mesh: Bacterial Typing Techniques, Chaperonin 60/genetics, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Sphaerotilus/*classification/genetics/*isolation & purification/metabolism, Sulfur Compounds/metabolism, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 282 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 565) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-565 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86927 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID39471.1 | StrainInfo: A central database for resolving microbial strain identifiers |