Strain identifier
BacDive ID: 17927
Type strain: 
Species: Aquabacterium fontiphilum
Strain Designation: CS-6
Strain history: <- LMG <- W.-M. Chen, Department of Seafood Science, University Kaohsing City
NCBI tax ID(s): 450365 (species)
version 8.1 (current version)
General
@ref: 16559
BacDive-ID: 17927
DSM-Number: 22961
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Aquabacterium fontiphilum CS-6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from spring water.
NCBI tax id
- NCBI tax id: 450365
- Matching level: species
strain history
- @ref: 16559
- history: <- LMG <- W.-M. Chen, Department of Seafood Science, University Kaohsing City
doi: 10.13145/bacdive17927.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Aquabacterium
- species: Aquabacterium fontiphilum
- full scientific name: Aquabacterium fontiphilum Lin et al. 2009
@ref: 16559
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Aquabacterium
species: Aquabacterium fontiphilum
full scientific name: Aquabacterium fontiphilum Lin et al. 2009
strain designation: CS-6
type strain: yes
Morphology
cell morphology
- @ref: 28895
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
multimedia
- @ref: 16559
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_22961.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 16559
- name: MEDIUM R2A MODIFIED (DSMZ Medium 830a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830a
- composition: Name: MEDIUM R2A MODIFIED (DSMZ Medium 830a) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Tween 80 Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16559 | positive | growth | 25 | mesophilic |
| 28895 | positive | optimum | 25-30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 28895 | positive | growth | 05-09 | alkaliphile |
| 28895 | positive | optimum | 07-08 |
Physiology and metabolism
oxygen tolerance
- @ref: 28895
- oxygen tolerance: aerobe
spore formation
- @ref: 28895
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 28895 | NaCl | positive | growth | <2 % |
| 28895 | NaCl | positive | optimum | 1 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 28895 | 16449 | alanine | + | carbon source |
| 28895 | 35391 | aspartate | + | carbon source |
| 28895 | 16947 | citrate | + | carbon source |
| 28895 | 15740 | formate | + | carbon source |
| 28895 | 24148 | galactonate | + | carbon source |
| 28895 | 24175 | galacturonate | + | carbon source |
| 28895 | 5291 | gelatin | + | carbon source |
| 28895 | 29987 | glutamate | + | carbon source |
| 28895 | 17754 | glycerol | + | carbon source |
| 28895 | 17240 | itaconate | + | carbon source |
| 28895 | 24996 | lactate | + | carbon source |
| 28895 | 29864 | mannitol | + | carbon source |
| 28895 | 28053 | melibiose | + | carbon source |
| 28895 | 18257 | ornithine | + | carbon source |
| 28895 | 26546 | rhamnose | + | carbon source |
| 28895 | 30911 | sorbitol | + | carbon source |
| 28895 | 17748 | thymidine | + | carbon source |
| 28895 | 53424 | tween 20 | + | carbon source |
| 28895 | 53423 | tween 40 | + | carbon source |
| 28895 | 53425 | tween 60 | + | carbon source |
| 28895 | 53426 | tween 80 | + | carbon source |
| 28895 | 16199 | urea | + | carbon source |
| 28895 | 16704 | uridine | + | carbon source |
| 28895 | 27248 | urocanic acid | + | carbon source |
enzymes
- @ref: 28895
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 16559
- sample type: spring water
- geographic location: Hsinchu County (Nature Valley)
- country: Taiwan
- origin.country: TWN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Spring
Safety information
risk assessment
- @ref: 16559
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16559
- description: Aquabacterium fontiphilum strain CS-6 16S ribosomal RNA gene, partial sequence
- accession: EF626687
- length: 1439
- database: ena
- NCBI tax ID: 450365
Genome sequences
- @ref: 66792
- description: Aquabacterium fontiphilum CS-6
- accession: GCA_009909205
- assembly level: contig
- database: ncbi
- NCBI tax ID: 450365
GC content
- @ref: 16559
- GC-content: 63.4
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.399 | no |
| flagellated | yes | 78.426 | no |
| gram-positive | no | 98.67 | no |
| anaerobic | no | 97.893 | yes |
| aerobic | yes | 81.613 | no |
| halophile | no | 91.557 | no |
| spore-forming | no | 95.139 | yes |
| glucose-util | no | 52.634 | no |
| thermophile | no | 93.043 | yes |
| glucose-ferment | no | 90.629 | no |
External links
@ref: 16559
culture collection no.: DSM 22961, BCRC 17729, LMG 24215
straininfo link
- @ref: 86916
- straininfo: 309053
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19329587 | Aquabacterium fontiphilum sp. nov., isolated from spring water. | Lin MC, Jiang SR, Chou JH, Arun AB, Young CC, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.000745-0 | 2009 | Bacterial Typing Techniques, Betaproteobacteria/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Taiwan, *Water Microbiology | Genetics |
| Phylogeny | 21551326 | Aquabacterium limnoticum sp. nov., isolated from a freshwater spring. | Chen WM, Cho NT, Yang SH, Arun AB, Young CC, Sheu SY | Int J Syst Evol Microbiol | 10.1099/ijs.0.030635-0 | 2011 | Aerobiosis, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Benzoquinones/analysis, Betaproteobacteria/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Natural Springs/*microbiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Taiwan, Temperature | Genetics |
| Phylogeny | 26297008 | Aquabacterium olei sp. nov., an oil-degrading bacterium isolated from oil-contaminated soil. | Pham VHT, Jeong SW, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000458 | 2015 | Bacterial Typing Techniques, Base Composition, Betaproteobacteria/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16559 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22961) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22961 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 28895 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25335 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 86916 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309053.1 | StrainInfo: A central database for resolving microbial strain identifiers |