Strain identifier
BacDive ID: 17923
Type strain: 
Species: Chromatocurvus halotolerans
Strain Designation: EG19
Strain history: <- V. Yurkov, Dept. Microbiol., Univ. Manitoba, Winnipeg, Canada; EG19 <- J. T. Csotonyi
NCBI tax ID(s): 1132028 (species)
version 8.1 (current version)
General
@ref: 16805
BacDive-ID: 17923
DSM-Number: 23344
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Chromatocurvus halotolerans EG19 is a mesophilic, motile bacterium that was isolated from hypersaline brine spring.
NCBI tax id
- NCBI tax id: 1132028
- Matching level: species
strain history
- @ref: 16805
- history: <- V. Yurkov, Dept. Microbiol., Univ. Manitoba, Winnipeg, Canada; EG19 <- J. T. Csotonyi
doi: 10.13145/bacdive17923.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cellvibrionales
- family: Halieaceae
- genus: Chromatocurvus
- species: Chromatocurvus halotolerans
- full scientific name: Chromatocurvus halotolerans corrig. Csotonyi et al. 2012
synonyms
- @ref: 20215
- synonym: Chromocurvus halotolerans
@ref: 16805
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Halieaceae, not assigned to order
family: Halieaceae
genus: Chromatocurvus
species: Chromatocurvus halotolerans
full scientific name: Chromatocurvus halotolerans Csotonyi et al. 2012 emend. Spring et al. 2013
strain designation: EG19
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.419 | |
| 69480 | 99.997 | negative |
Culture and growth conditions
culture medium
- @ref: 16805
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 16805
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.995 |
Isolation, sampling and environmental information
isolation
- @ref: 16805
- sample type: hypersaline brine spring
- geographic location: Manitoba, near Swan River, East German Creek
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_27010.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_305;96_13433;97_16338;98_20243;99_27010&stattab=map
- Last taxonomy: Chromatocurvus halotolerans subclade
- 16S sequence: AM691086
- Sequence Identity:
- Total samples: 278
- soil counts: 47
- aquatic counts: 210
- animal counts: 16
- plant counts: 5
Safety information
risk assessment
- @ref: 16805
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16805
- description: Chromatocurvus halotolerans 16S rRNA gene, type strain EG19T
- accession: AM691086
- length: 1523
- database: ena
- NCBI tax ID: 1132028
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chromatocurvus halotolerans DSM 23344 | GCA_004340525 | contig | ncbi | 1132028 |
| 66792 | Chromatocurvus halotolerans DSM 23344 | GCA_003428685 | contig | ncbi | 1132028 |
| 66792 | Chromatocurvus halotolerans strain DSM 23344 | 1132028.3 | wgs | patric | 1132028 |
| 66792 | Chromatocurvus halotolerans strain DSM 23344 | 1132028.5 | wgs | patric | 1132028 |
| 66792 | Chromatocurvus halotolerans DSM 23344 | 2795385448 | draft | img | 1132028 |
GC content
- @ref: 16805
- GC-content: 63.0
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 87.734 | no |
| flagellated | no | 56.359 | no |
| gram-positive | no | 98.443 | no |
| anaerobic | no | 96.419 | no |
| aerobic | yes | 82.274 | no |
| halophile | yes | 86.642 | no |
| spore-forming | no | 97.255 | no |
| glucose-util | yes | 70.917 | no |
| thermophile | no | 98.422 | no |
| glucose-ferment | no | 88.301 | no |
External links
@ref: 16805
culture collection no.: DSM 23344, VKM B-2659
straininfo link
- @ref: 86912
- straininfo: 402196
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21479531 | Chromocurvus halotolerans gen. nov., sp. nov., a gammaproteobacterial obligately aerobic anoxygenic phototroph, isolated from a Canadian hypersaline spring. | Csotonyi JT, Stackebrandt E, Swiderski J, Schumann P, Yurkov V | Arch Microbiol | 10.1007/s00203-011-0698-5 | 2011 | Bacteriochlorophyll A/analysis, Base Composition, DNA, Bacterial/genetics, Gammaproteobacteria/*classification/genetics/*isolation & purification, Hydrogen-Ion Concentration, Manitoba, Photosynthesis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Salts, Temperature, *Water Microbiology | Enzymology |
| Metabolism | 23705861 | Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability. | Spring S, Riedel T | BMC Microbiol | 10.1186/1471-2180-13-117 | 2013 | Aquatic Organisms/chemistry/*growth & development/*metabolism, Bacteriochlorophyll A/*analysis, Carbon/*metabolism, Energy Metabolism, Gammaproteobacteria/chemistry/*growth & development/*metabolism, Gene Expression Regulation, Bacterial, Light, Oxidation-Reduction, Oxygen/*metabolism, Photosynthesis | |
| Phylogeny | 23705883 | Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans. | Spring S, Riedel T, Sproer C, Yan S, Harder J, Fuchs BM | BMC Microbiol | 10.1186/1471-2180-13-118 | 2013 | Aerobiosis, Aquatic Organisms/chemistry/*classification/*genetics/isolation & purification, Bacteriochlorophyll A/*analysis, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gammaproteobacteria/chemistry/*classification/*genetics/isolation & purification, Genetic Variation, Germany, Metabolic Networks and Pathways/genetics, Molecular Sequence Data, North Sea, Photosynthesis, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA | Enzymology |
| Enzymology | 25006520 | Function and Evolution of the Sox Multienzyme Complex in the Marine Gammaproteobacterium Congregibacter litoralis. | Spring S | ISRN Microbiol | 10.1155/2014/597418 | 2014 | ||
| Phylogeny | 31145673 | Kineobactrum sediminis gen. nov., sp. nov., isolated from marine sediment. | Chang YQ, Meng X, Du ZZ, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003492 | 2019 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Genes, Bacterial, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16805 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23344) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23344 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86912 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402196.1 | StrainInfo: A central database for resolving microbial strain identifiers |