Strain identifier
BacDive ID: 17912
Type strain: 
Species: Gallaecimonas pentaromativorans
Strain Designation: CEE_131
Strain history: <- A. Rodriguez-Bianco, L'observatoire Océanologique de Banyuls, France; CEE131
NCBI tax ID(s): 584787 (species)
version 8.1 (current version)
General
@ref: 16061
BacDive-ID: 17912
DSM-Number: 21945
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Gallaecimonas pentaromativorans CEE_131 is a mesophilic, Gram-negative, motile bacterium that was isolated from intertidal sediment.
NCBI tax id
- NCBI tax id: 584787
- Matching level: species
strain history
- @ref: 16061
- history: <- A. Rodriguez-Bianco, L'observatoire Océanologique de Banyuls, France; CEE131
doi: 10.13145/bacdive17912.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Gallaecimonadaceae
- genus: Gallaecimonas
- species: Gallaecimonas pentaromativorans
- full scientific name: Gallaecimonas pentaromativorans Rodríguez-Blanco et al. 2010
@ref: 16061
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Gammaproteobacteria, not assigned to family
genus: Gallaecimonas
species: Gallaecimonas pentaromativorans
full scientific name: Gallaecimonas pentaromativorans Rodríguez-Blanco et al. 2010
strain designation: CEE_131
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 29459 | negative | rod-shaped | yes | |
| 69480 | yes | 97.74 | ||
| 69480 | negative | 99.967 |
pigmentation
- @ref: 29459
- production: yes
Culture and growth conditions
culture medium
- @ref: 16061
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16061 | positive | growth | 30 | mesophilic |
| 29459 | positive | growth | 20-37 | |
| 29459 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29459 | positive | growth | 05-10 | alkaliphile |
| 29459 | positive | optimum | 6.5 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.889 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29459 | NaCl | positive | growth | <7 % |
| 29459 | NaCl | positive | optimum | 1.5 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29459 | 22599 | arabinose | + | carbon source |
| 29459 | 16947 | citrate | + | carbon source |
| 29459 | 25115 | malate | + | carbon source |
| 29459 | 17306 | maltose | + | carbon source |
| 29459 | 506227 | N-acetylglucosamine | + | carbon source |
| 29459 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 29459
- value: gelatinase
- activity: +
Isolation, sampling and environmental information
isolation
- @ref: 16061
- sample type: intertidal sediment
- geographic location: A Coruña, Corcubion Ria in Cee: 42°57' N, 9°10' W
- country: Spain
- origin.country: ESP
- continent: Europe
- latitude: 42.95
- longitude: -9.1667
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Terrestrial | #Tidal flat |
taxonmaps
- @ref: 69479
- File name: preview.99_13505.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_1378;97_8299;98_10199;99_13505&stattab=map
- Last taxonomy: Gallaecimonas pentaromativorans subclade
- 16S sequence: FM955227
- Sequence Identity:
- Total samples: 160
- soil counts: 7
- aquatic counts: 115
- animal counts: 36
- plant counts: 2
Safety information
risk assessment
- @ref: 16061
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 16061 | Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_42 | FM955223 | 1379 | ena | 584787 |
| 16061 | Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_33 | FM955224 | 1386 | ena | 584787 |
| 16061 | Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_45 | FM955225 | 1381 | ena | 584787 |
| 16061 | Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_32 | FM955226 | 1295 | ena | 584787 |
| 16061 | Gallaecimonas pentaromativorans partial 16S rRNA gene, type strain CEE_131T, clone CEE_131_36 | FM955227 | 1301 | ena | 584787 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gallaecimonas pentaromativorans DSM 21945 | GCA_003751625 | scaffold | ncbi | 584787 |
| 66792 | Gallaecimonas pentaromativorans strain DSM 21945 | 584787.4 | wgs | patric | 584787 |
| 66792 | Gallaecimonas pentaromativorans DSM 21945 | 2784746796 | draft | img | 584787 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 16061 | 41.7 | high performance liquid chromatography (HPLC) |
| 29459 | 41.7 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.671 | yes |
| flagellated | yes | 80.551 | no |
| gram-positive | no | 98.579 | yes |
| anaerobic | no | 98.204 | no |
| aerobic | yes | 91.826 | no |
| halophile | no | 67.638 | no |
| spore-forming | no | 94.53 | no |
| glucose-util | yes | 91.337 | no |
| thermophile | no | 99.556 | yes |
| glucose-ferment | no | 76.115 | no |
External links
@ref: 16061
culture collection no.: DSM 21945, CECT 7479
straininfo link
- @ref: 86901
- straininfo: 368958
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19654338 | Gallaecimonas pentaromativorans gen. nov., sp. nov., a bacterium carrying 16S rRNA gene heterogeneity and able to degrade high-molecular-mass polycyclic aromatic hydrocarbons. | Rodriguez-Blanco A, Vetion G, Escande ML, Delille D, Ghiglione JF | Int J Syst Evol Microbiol | 10.1099/ijs.0.013532-0 | 2009 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Geologic Sediments/microbiology, Molecular Sequence Data, Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/*genetics, Spain | Metabolism |
| Phylogeny | 22659502 | Gallaecimonas xiamenensis sp. nov., isolated from seawater. | Wang J, Lai Q, Duan X, Fu Y, Wang L, Wang W, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijs.0.042283-0 | 2012 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Water Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16061 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21945) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21945 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29459 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25863 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86901 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID368958.1 | StrainInfo: A central database for resolving microbial strain identifiers |