Strain identifier

BacDive ID: 17900

Type strain: Yes

Species: Eionea nigra

Strain Designation: 17X/A02/237

Strain history: CIP <- 2007, L. Urios, Paris Univ. VI, CNRS, Banyuls sur mer, France, strain: 17X/A02/237

NCBI tax ID(s): 287488 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8292

BacDive-ID: 17900

DSM-Number: 19752

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Eionea nigra 17X/A02/237 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from coastal waters.

NCBI tax id

  • NCBI tax id: 287488
  • Matching level: species

strain history

@refhistory
8292<- P. Lebaron; 17X/A02/237 <- L. Intertaglia
420152007, L. Urios, Paris Univ. VI, CNRS, Banyuls sur mer, France, strain: 17X/A02/237
121295CIP <- 2007, L. Urios, Paris Univ. VI, CNRS, Banyuls sur mer, France, strain: 17X/A02/237

doi: 10.13145/bacdive17900.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Cellvibrionales
  • family: Cellvibrionaceae
  • genus: Eionea
  • species: Eionea nigra
  • full scientific name: Eionea nigra Urios et al. 2011

@ref: 8292

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Cellvibrionaceae, not assigned to order

family: Cellvibrionaceae

genus: Eionea

species: Eionea nigra

full scientific name: Eionea nigra Urios et al. 2011

strain designation: 17X/A02/237

type strain: yes

Morphology

cell morphology

  • @ref: 121295
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8292BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42015Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
121295CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
8292positivegrowth28mesophilic
42015positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12129517632nitrate-reduction
12129516301nitrite-reduction

metabolite production

  • @ref: 121295
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
121295oxidase-
121295catalase-1.11.1.6
121295urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121295-+++-------+--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
8292coastal watersMediterranean Sea, bay of Banyuls-sur-Mer (42° 29' N 3° 08' E)FranceFRAEurope42.48333.1333
121295Environment, Mediterranean seaBanyuls sur merFranceFRAEurope2002

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_21153.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_235;96_10728;97_12970;98_15958;99_21153&stattab=map
  • Last taxonomy: Eionea nigra subclade
  • 16S sequence: AY576771
  • Sequence Identity:
  • Total samples: 2868
  • soil counts: 25
  • aquatic counts: 2676
  • animal counts: 159
  • plant counts: 8

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
82921Risk group (German classification)
1212951Risk group (French classification)

Sequence information

16S sequences

  • @ref: 8292
  • description: Eionea nigra strain 17X/A02/237 16S ribosomal RNA gene, partial sequence
  • accession: AY576771
  • length: 1463
  • database: ena
  • NCBI tax ID: 287488

GC content

  • @ref: 8292
  • GC-content: 47.5
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 8292

culture collection no.: DSM 19752, CIP 109759, MOLA 288

straininfo link

  • @ref: 86889
  • straininfo: 377748

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20729310Eionea nigra gen. nov., sp. nov., a gammaproteobacterium from the Mediterranean Sea.Urios L, Intertaglia L, Lesongeur F, Lebaron PInt J Syst Evol Microbiol10.1099/ijs.0.023952-02010Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Mediterranean Sea, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny26025942Eionea flava sp. nov., isolated from coastal seawater, and emended description of the genus Eionea.Baek K, Choi A, Cho JCInt J Syst Evol Microbiol10.1099/ijs.0.0003662015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Water MicrobiologyGenetics

Reference

@idauthorscataloguedoi/urltitle
8292Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19752)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19752
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
42015Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7538
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86889Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377748.1StrainInfo: A central database for resolving microbial strain identifiers
121295Curators of the CIPCollection of Institut Pasteur (CIP 109759)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109759