Strain identifier

BacDive ID: 1790

Type strain: Yes

Species: Bosea vestrisii

Strain Designation: 34635

Strain history: CIP <- 1999, B. La Scola, NRC, Medicine Fac., Marseille, France: strain 34635

NCBI tax ID(s): 151416 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15584

BacDive-ID: 1790

DSM-Number: 21229

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Bosea vestrisii 34635 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water supply of the La Timone Hospital Centre.

NCBI tax id

  • NCBI tax id: 151416
  • Matching level: species

strain history

@refhistory
15584<- CCUG <- B. La Scola
395001999, B. La Scola, NRC, Fac. Medicine, Marseille, France: strain 34635
123831CIP <- 1999, B. La Scola, NRC, Medicine Fac., Marseille, France: strain 34635

doi: 10.13145/bacdive1790.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Boseaceae
  • genus: Bosea
  • species: Bosea vestrisii
  • full scientific name: Bosea vestrisii La Scola et al. 2003

@ref: 15584

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Boseaceae

genus: Bosea

species: Bosea vestrisii

full scientific name: Bosea vestrisii La Scola et al. 2003

strain designation: 34635

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityflagellum arrangement
23324negativerod-shapedyesmonotrichous, polar
123831negativerod-shapedyes

colony morphology

  • @ref: 55671
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15584R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
23324Columbia agaryes5% sheep blood
23324MacConkey's agaryes5% sheep blood
39500MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
123831CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
123831CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
15584positivegrowth28mesophilic
23324nogrowth42thermophilic
23324positivegrowth25mesophilic
23324positivegrowth37mesophilic
39500positivegrowth30mesophilic
55671positivegrowth30mesophilic
123831positivegrowth30mesophilic
123831nogrowth15psychrophilic
123831nogrowth22psychrophilic
123831nogrowth37mesophilic
123831nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 55671
  • oxygen tolerance: aerobe

halophily

  • @ref: 23324
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2332417306maltose-assimilation
2332418401phenylacetate-assimilation
23324168082-dehydro-D-gluconate-builds acid from
23324174265-dehydro-D-gluconate-builds acid from
2332427613amygdalin-builds acid from
2332418305arbutin-builds acid from
2332415963ribitol-builds acid from
2332417108D-arabinose-builds acid from
2332418333D-arabitol-builds acid from
2332417057cellobiose-builds acid from
2332415824D-fructose-builds acid from
2332428847D-fucose-builds acid from
2332412936D-galactose-builds acid from
2332417634D-glucose-builds acid from
2332417716lactose-builds acid from
2332462318D-lyxose-builds acid from
2332417306maltose-builds acid from
2332416899D-mannitol-builds acid from
2332416024D-mannose-builds acid from
233246731melezitose-builds acid from
2332428053melibiose-builds acid from
2332416634raffinose-builds acid from
2332416988D-ribose-builds acid from
2332417992sucrose-builds acid from
2332417924D-sorbitol-builds acid from
2332416443D-tagatose-builds acid from
2332416551D-trehalose-builds acid from
2332432528turanose-builds acid from
2332465327D-xylose-builds acid from
2332416813galactitol-builds acid from
2332417113erythritol-builds acid from
233244853esculin-builds acid from
2332428066gentiobiose-builds acid from
2332424265gluconate-builds acid from
2332417754glycerol-builds acid from
2332428087glycogen-builds acid from
2332417268myo-inositol-builds acid from
2332415443inulin-builds acid from
2332430849L-arabinose-builds acid from
2332418403L-arabitol-builds acid from
2332418287L-fucose-builds acid from
2332462345L-rhamnose-builds acid from
2332417266L-sorbose-builds acid from
2332465328L-xylose-builds acid from
23324320061methyl alpha-D-glucopyranoside-builds acid from
2332443943methyl alpha-D-mannoside-builds acid from
2332474863methyl beta-D-xylopyranoside-builds acid from
23324506227N-acetylglucosamine-builds acid from
2332417814salicin-builds acid from
2332428017starch-builds acid from
2332417151xylitol-builds acid from
233244853esculin-hydrolysis
233245291gelatin-hydrolysis
2332416094thiosulfate-oxidation
2332417632nitrate-reduction
2332417128adipate+assimilation
2332422599arabinose+assimilation
2332416947citrate+assimilation
2332417634D-glucose+assimilation
2332424265gluconate+assimilation
2332425115malate+assimilation
2332417306maltose+assimilation
2332429864mannitol+assimilation
2332437684mannose+assimilation
23324506227N-acetylglucosamine+assimilation
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
123831606565hippurate+hydrolysis
12383117632nitrate+reduction
12383116301nitrite+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.group IDis resistant
2332450845doxycyclineyesyes0.25 µg/mL (MIC)
233247528netilmycinyesyes0.5 µg/mL (MIC)
233243508ceftazidimeyesyes128 µg/mL (MIC)
2332428077rifampicinyesyes16 µg/mL (MIC)
23324209807cefoxitinyesyes2 µg/mL (MIC)
233242676amoxicillinyesyes256 µg/mL (MIC)
23324478164cefepimeyesyes256 µg/mL (MIC)
2332429007ceftriaxoneyesyes256 µg/mL (MIC)
233243542cephalothinyesyes256 µg/mL (MIC)
233243770co-trimoxazoleyesyes256 µg/mL (MIC)
2332437943colistinyesyes256 µg/mL (MIC)
2332417334penicillinyesyes256 µg/mL (MIC)
233248232piperacillinyesyes256 µg/mL (MIC)
233249587ticarcillinyesyes256 µg/mL (MIC)
2332428001vancomycinyesyes256 µg/mL (MIC)
233242676amoxicillinyesyes32 µg/mL (MIC)12
2332417833gentamicinyesyes32 µg/mL (MIC)
23324471744imipenemyesyes32 µg/mL (MIC)
233242637amikacinyesyes4 µg/mL (MIC)
23324100241ciprofloxacinyesyes64 µg/mL (MIC)
2332428864tobramycinyesyes64 µg/mL (MIC)
2332448923erythromycinyesyes8 µg/mL (MIC)
2332448947clavulanic acidyesyes32 µg/mL (MIC)12
1238310129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12383135581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
23324arginine dihydrolase-3.5.3.6
23324beta-galactosidase-3.2.1.23
23324catalase+1.11.1.6
23324cytochrome oxidase+1.9.3.1
23324urease+3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
123831oxidase+
123831alcohol dehydrogenase-1.1.1.1
123831gelatinase-
123831catalase+1.11.1.6
123831gamma-glutamyltransferase+2.3.2.2
123831lysine decarboxylase-4.1.1.18
123831ornithine decarboxylase-4.1.1.17
123831urease+3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    55671C16:01416
    55671C18:00.518
    55671C16:0 3OH3.317.52
    55671C16:1 ω5c4.615.908
    55671C16:1 ω7c3.915.819
    55671C17:0 CYCLO7.216.888
    55671C18:1 ω7c /12t/9t56.717.824
    55671C19:0 CYCLO ω8c9.818.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
55671-+---+----+---------
123831-+++-+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
55671+---+----+----+--++-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
23324water supply of the La Timone Hospital CentreMarseilleFranceFRAEurope
55671Water,hospital water supply
15584Water, hospital water supplyMarseilleFranceFRAEurope
123831Environment, WaterMarseilleFranceFRAEurope1999

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Infection#Medical environment#Clinic

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
155841Risk group (German classification)
1238311Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15584
  • description: Alpha proteobacterium 34635 16S ribosomal RNA gene, partial sequence
  • accession: AF288306
  • length: 1451
  • database: ena
  • NCBI tax ID: 1212487

External links

@ref: 15584

culture collection no.: DSM 21229, CCUG 43114, CIP 106340, CCUG 43114 T

straininfo link

  • @ref: 71437
  • straininfo: 100567

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12656146Bosea eneae sp. nov., Bosea massiliensis sp. nov. and Bosea vestrisii sp. nov., isolated from hospital water supplies, and emendation of the genus Bosea (Das et al. 1996).La Scola B, Mallet MN, Grimont PAD, Raoult DInt J Syst Evol Microbiol10.1099/ijs.0.02127-02003Alphaproteobacteria/*classification/genetics/isolation & purification/metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Hospitals, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, *Water MicrobiologyGenetics
Phylogeny30882299Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water.Albert RA, McGuine M, Pavlons SC, Roecker J, Bruess J, Mossman S, Sun S, King M, Hong S, Farrance CE, Danner J, Joung Y, Shapiro N, Whitman WB, Busse HJInt J Syst Evol Microbiol10.1099/ijsem.0.0033192019Bacterial Typing Techniques, Base Composition, Bradyrhizobiaceae/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Michigan, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15584Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21229)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21229
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23324Bernard La Scola, Marie-Noelle Mallet, Patrick A. D. Grimont, Didier Raoult10.1099/ijs.0.02127-0Bosea eneae sp. nov., Bosea massiliensis sp. nov. and Bosea vestrisii sp. nov., isolated from hospital water supplies, and emendation of the genus Bosea (Das et al. 1996)IJSEM 53: 15-20 200312656146
39500Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18460
55671Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43114 T)https://www.ccug.se/strain?id=43114
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
71437Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100567.1StrainInfo: A central database for resolving microbial strain identifiers
123831Curators of the CIPCollection of Institut Pasteur (CIP 106340)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106340