Strain identifier

BacDive ID: 17870

Type strain: Yes

Species: Sebaldella termitidis

Strain Designation: Sebald 107A

Strain history: <- NCTC <- E. M. Barnes; Sebald 107A

NCBI tax ID(s): 526218 (strain), 826 (species)

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General

@ref: 17681

BacDive-ID: 17870

DSM-Number: 24458

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Sebaldella termitidis Sebald 107A is an anaerobe, mesophilic bacterium that was isolated from posterior intestinal contents of termite Reticulitermes lucifugus.

NCBI tax id

NCBI tax idMatching level
526218strain
826species

strain history

  • @ref: 17681
  • history: <- NCTC <- E. M. Barnes; Sebald 107A

doi: 10.13145/bacdive17870.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Leptotrichiaceae
  • genus: Sebaldella
  • species: Sebaldella termitidis
  • full scientific name: Sebaldella termitidis (Sebald 1962) Collins and Shah 1986

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides termitidis

@ref: 17681

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Leptotrichiaceae

genus: Sebaldella

species: Sebaldella termitidis

full scientific name: Sebaldella termitidis (Sebald 1962) Collins and Shah 1986

strain designation: Sebald 107A

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.937
6948099.807negative

colony morphology

  • @ref: 17681
  • type of hemolysis: gamma
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17681COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
17681PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 17681
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
17681anaerobe
69480anaerobe99.454

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.96

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose+builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose+builds acid from
6836717754glycerol-builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836717814salicin+builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol+builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
17681catalase-1.11.1.6
17681cytochrome-c oxidase-1.9.3.1
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
17681--++-++++/---+-++----+

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
17681---++++--++-----+------+/------

Isolation, sampling and environmental information

isolation

  • @ref: 17681
  • sample type: posterior intestinal contents of termite Reticulitermes lucifugus
  • host species: Reticulitermes lucifugus

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract

Safety information

risk assessment

  • @ref: 17681
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17681
  • description: Sebaldella termitidis ATCC 33386 16S ribosomal RNA gene, partial sequence
  • accession: M58678
  • length: 1514
  • database: ena
  • NCBI tax ID: 526218

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sebaldella termitidis ATCC 33386GCA_000024405completencbi526218
66792Sebaldella termitidis NCTC11300GCA_900456835contigncbi826
66792Sebaldella termitidis ATCC 33386526218.6completepatric526218
66792Sebaldella termitidis ATCC 33386526218.12plasmidpatric526218
66792Sebaldella termitidis ATCC 33386526218.11plasmidpatric526218
66792Sebaldella termitidis strain NCTC11300826.3wgspatric826
66792Sebaldella termitidis ATCC 33386646311952completeimg526218
66792Sebaldella termitidis NCTC 113002831688588draftimg826

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes62no
motileno94.105no
flagellatedno96.247no
gram-positiveno76.347no
anaerobicyes95.609no
aerobicno96.68yes
halophileno83.994no
spore-formingno92.307no
thermophileno94.058yes
glucose-utilyes85.997no
glucose-fermentyes61.468no

External links

@ref: 17681

culture collection no.: DSM 24458, ATCC 33386, NCTC 11300

straininfo link

  • @ref: 86860
  • straininfo: 44952

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics21304705Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300).Harmon-Smith M, Celia L, Chertkov O, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Pitluck S, Pati A, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Goker M, Beck B, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Chen FStand Genomic Sci10.4056/sigs.8117992010
Phylogeny26377576Root sepsis associated with insect-dwelling Sebaldella termitidis in a lesser dwarf lemur (Cheirogaleus medius).Eisenberg T, Glaeser SP, Kampfer P, Schauerte N, Geiger CAntonie Van Leeuwenhoek10.1007/s10482-015-0590-42015Anaerobiosis, Animals, Bacterial Typing Techniques, Cheirogaleidae/*microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fusobacteria/*classification/genetics/*isolation & purification/physiology, Gram-Negative Bacterial Infections/microbiology/surgery/*veterinary, Molecular Sequence Data, Periapical Abscess/microbiology/surgery/*veterinary, Phylogeny, Primate Diseases/*microbiology/surgery, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17681Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24458)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24458
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
86860Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44952.1StrainInfo: A central database for resolving microbial strain identifiers