Strain identifier

BacDive ID: 17869

Type strain: Yes

Species: Streptobacillus moniliformis

Strain Designation: 9901

Strain history: <- ATCC <- C.H. Pierce-Chase <- L. Dienes; 9901

NCBI tax ID(s): 519441 (strain), 34105 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4604

BacDive-ID: 17869

DSM-Number: 12112

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic

description: Streptobacillus moniliformis 9901 is a microaerophile, mesophilic bacterium that was isolated from patient with rat-bite fever.

NCBI tax id

NCBI tax idMatching level
34105species
519441strain

strain history

  • @ref: 4604
  • history: <- ATCC <- C.H. Pierce-Chase <- L. Dienes; 9901

doi: 10.13145/bacdive17869.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Leptotrichiaceae
  • genus: Streptobacillus
  • species: Streptobacillus moniliformis
  • full scientific name: Streptobacillus moniliformis Levaditi et al. 1925 (Approved Lists 1980)

@ref: 4604

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Leptotrichiaceae

genus: Streptobacillus

species: Streptobacillus moniliformis

full scientific name: Streptobacillus moniliformis Levaditi et al. 1925 emend. Woo et al. 2014 emend. Eisenberg et al. 2015

strain designation: 9901

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.288
6948099.752negative

colony morphology

  • @ref: 4604
  • type of hemolysis: gamma
  • incubation period: 1-2 days

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_12112_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4604COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
4604NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 4604
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4604
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.998

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation

enzymes

@refvalueactivityec
4604catalase+1.11.1.6
4604cytochrome-c oxidase-1.9.3.1
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
4604+-----++/---+--
4604+++/----++-++--
4604+++++++++++-+
4604-+++/----++-++-
4604-+-----++/---+-
4604++++++++++++-

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
65645+-------+-----+-+++----++-+++
4604---------------+++-----------
4604----------------+++++++/--+++++

Isolation, sampling and environmental information

isolation

  • @ref: 4604
  • sample type: patient with rat-bite fever
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Patient
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Other#Wound

Safety information

risk assessment

  • @ref: 4604
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: S.moniliformis (ATCC 14647, Type strain) mRNA for 16S ribosomal RNA
  • accession: Z35305
  • length: 1485
  • database: ena
  • NCBI tax ID: 519441

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptobacillus moniliformis DSM 12112GCA_000024565completencbi519441
66792Streptobacillus moniliformis NCTC10651GCA_900458955contigncbi34105
66792Streptobacillus moniliformis DSM 12112519441.6completepatric519441
66792Streptobacillus moniliformis DSM 12112519441.8plasmidpatric519441
66792Streptobacillus moniliformis strain NCTC1065134105.47wgspatric34105
66792Streptobacillus moniliformis NCTC 106512834211295draftimg34105
66792Streptobacillus moniliformis 9901, DSM 12112646311956completeimg519441

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes77no
motileno95.972no
flagellatedno98.458no
gram-positiveyes53.418no
anaerobicno50.987yes
aerobicno98.3yes
halophileyes59.288no
spore-formingno96.957no
thermophileno86.479no
glucose-utilyes78.374no
glucose-fermentyes68.736no

External links

@ref: 4604

culture collection no.: DSM 12112, ATCC 14647, CCUG 13453, CCUG 2469, NCTC 10651

straininfo link

  • @ref: 86859
  • straininfo: 36136

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18525173Isolation of Streptobacillus moniliformis from a pet rat.Hayashimoto N, Yoshida H, Goto K, Takakura AJ Vet Med Sci10.1292/jvms.70.4932008Animals, Animals, Domestic, Female, Fusobacterium Infections/microbiology/*veterinary, Rats, Rodent Diseases/*microbiology, Streptobacillus/classification/genetics/*isolation & purificationEnzymology
Phylogeny24912824Streptobacillus hongkongensis sp. nov., isolated from patients with quinsy and septic arthritis, and emended descriptions of the genus Streptobacillus and Streptobacillus moniliformis.Woo PCY, Wu AKL, Tsang CC, Leung KW, Ngan AHY, Curreem SOT, Lam KW, Chen JHK, Chan JFW, Lau SKPInt J Syst Evol Microbiol10.1099/ijs.0.061242-02014Adult, Arthritis, Infectious/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genes, Bacterial, Hong Kong, Humans, Male, Middle Aged, Molecular Sequence Data, Nucleic Acid Hybridization, Peritonsillar Abscess/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purificationPathogenicity
Phylogeny25858245Streptobacillus felis sp. nov., isolated from a cat with pneumonia, and emended descriptions of the genus Streptobacillus and of Streptobacillus moniliformis.Eisenberg T, Glaeser SP, Nicklas W, Mauder N, Contzen M, Aledelbi K, Kampfer PInt J Syst Evol Microbiol10.1099/ijs.0.0002382015Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Felis/*microbiology, Genes, Bacterial, Lung/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pneumonia, Bacterial/*veterinary, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purificationGenetics
Phylogeny26438009Streptobacillus notomytis sp. nov., isolated from a spinifex hopping mouse (Notomys alexis Thomas, 1922), and emended description of Streptobacillus Levaditi et al. 1925, Eisenberg et al. 2015 emend.Eisenberg T, Glaeser SP, Ewers C, Semmler T, Nicklas W, Rau J, Mauder N, Hofmann N, Imaoka K, Kimura M, Kampfer PInt J Syst Evol Microbiol10.1099/ijsem.0.0006542015Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Heart/microbiology, Japan, Molecular Sequence Data, Murinae/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rats, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purification, Western AustraliaGenetics
Phylogeny26705259Streptobacillus ratti sp. nov., isolated from a black rat (Rattus rattus).Eisenberg T, Imaoka K, Kimura M, Glaeser SP, Ewers C, Semmler T, Rau J, Nicklas W, Tanikawa T, Kampfer PInt J Syst Evol Microbiol10.1099/ijsem.0.0008692015Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Japan, Molecular Sequence Data, Mouth/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rats/*microbiology, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purificationGenetics
Phylogeny26813893Caviibacter abscessus gen. nov., sp. nov., a member of the family Leptotrichiaceae isolated from guinea pigs (Cavia porcellus).Eisenberg T, Glaeser SP, Ewers C, Semmler T, Drescher B, Kampfer PInt J Syst Evol Microbiol10.1099/ijsem.0.0009222016Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Germany, Guinea Pigs/*microbiology, Lymph Nodes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny27031261Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar).Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer RInt J Syst Evol Microbiol10.1099/ijsem.0.0010502016Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Ireland, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNATranscriptome
Phylogeny32209168Streptobacillus canis sp. nov. isolated from a dog.Eisenberg T, Heydel C, Prenger-Berninghoff E, Fawzy A, Kling U, Akimkin V, Semmler T, Muhldorfer K, Kampfer P, Blom J, Ewers CInt J Syst Evol Microbiol10.1099/ijsem.0.0040862020Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dogs/*microbiology, Fatty Acids/chemistry, Genes, Bacterial, Germany, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptobacillus/*classification/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4604Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12112)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12112
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
65645Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 2469)https://www.ccug.se/strain?id=2469
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
86859Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36136.1StrainInfo: A central database for resolving microbial strain identifiers