Strain identifier
BacDive ID: 17869
Type strain:
Species: Streptobacillus moniliformis
Strain Designation: 9901
Strain history: <- ATCC <- C.H. Pierce-Chase <- L. Dienes; 9901
NCBI tax ID(s): 519441 (strain), 34105 (species)
General
@ref: 4604
BacDive-ID: 17869
DSM-Number: 12112
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Streptobacillus moniliformis 9901 is a microaerophile, mesophilic bacterium that was isolated from patient with rat-bite fever.
NCBI tax id
NCBI tax id | Matching level |
---|---|
34105 | species |
519441 | strain |
strain history
- @ref: 4604
- history: <- ATCC <- C.H. Pierce-Chase <- L. Dienes; 9901
doi: 10.13145/bacdive17869.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Leptotrichiaceae
- genus: Streptobacillus
- species: Streptobacillus moniliformis
- full scientific name: Streptobacillus moniliformis Levaditi et al. 1925 (Approved Lists 1980)
@ref: 4604
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Leptotrichiaceae
genus: Streptobacillus
species: Streptobacillus moniliformis
full scientific name: Streptobacillus moniliformis Levaditi et al. 1925 emend. Woo et al. 2014 emend. Eisenberg et al. 2015
strain designation: 9901
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 95.288 | |
69480 | 99.752 | negative |
colony morphology
- @ref: 4604
- type of hemolysis: gamma
- incubation period: 1-2 days
multimedia
- @ref: 66793
- multimedia content: EM_DSM_12112_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4604 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
4604 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 4604
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4604
- oxygen tolerance: microaerophile
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.998
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
4604 | catalase | + | 1.11.1.6 |
4604 | cytochrome-c oxidase | - | 1.9.3.1 |
68380 | L-arginine arylamidase | + | |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
4604 | + | - | - | - | - | - | + | +/- | - | - | + | - | - |
4604 | + | + | +/- | - | - | - | + | + | - | + | + | - | - |
4604 | + | + | + | + | + | + | + | + | + | + | + | - | + |
4604 | - | + | + | +/- | - | - | - | + | + | - | + | + | - |
4604 | - | + | - | - | - | - | - | + | +/- | - | - | + | - |
4604 | + | + | + | + | + | + | + | + | + | + | + | + | - |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
65645 | + | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | + | + | + | - | - | - | - | + | + | - | + | + | + |
4604 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - |
4604 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | + | + | + | +/- | - | + | + | + | + | + |
Isolation, sampling and environmental information
isolation
- @ref: 4604
- sample type: patient with rat-bite fever
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | |
#Infection | #Patient | |
#Host | #Mammals | #Muridae (Mouse/Rat) |
#Host Body-Site | #Other | #Wound |
Safety information
risk assessment
- @ref: 4604
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: S.moniliformis (ATCC 14647, Type strain) mRNA for 16S ribosomal RNA
- accession: Z35305
- length: 1485
- database: ena
- NCBI tax ID: 519441
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptobacillus moniliformis DSM 12112 | GCA_000024565 | complete | ncbi | 519441 |
66792 | Streptobacillus moniliformis NCTC10651 | GCA_900458955 | contig | ncbi | 34105 |
66792 | Streptobacillus moniliformis DSM 12112 | 519441.6 | complete | patric | 519441 |
66792 | Streptobacillus moniliformis DSM 12112 | 519441.8 | plasmid | patric | 519441 |
66792 | Streptobacillus moniliformis strain NCTC10651 | 34105.47 | wgs | patric | 34105 |
66792 | Streptobacillus moniliformis NCTC 10651 | 2834211295 | draft | img | 34105 |
66792 | Streptobacillus moniliformis 9901, DSM 12112 | 646311956 | complete | img | 519441 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 77 | no |
motile | no | 95.972 | no |
flagellated | no | 98.458 | no |
gram-positive | yes | 53.418 | no |
anaerobic | no | 50.987 | yes |
aerobic | no | 98.3 | yes |
halophile | yes | 59.288 | no |
spore-forming | no | 96.957 | no |
thermophile | no | 86.479 | no |
glucose-util | yes | 78.374 | no |
glucose-ferment | yes | 68.736 | no |
External links
@ref: 4604
culture collection no.: DSM 12112, ATCC 14647, CCUG 13453, CCUG 2469, NCTC 10651
straininfo link
- @ref: 86859
- straininfo: 36136
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 18525173 | Isolation of Streptobacillus moniliformis from a pet rat. | Hayashimoto N, Yoshida H, Goto K, Takakura A | J Vet Med Sci | 10.1292/jvms.70.493 | 2008 | Animals, Animals, Domestic, Female, Fusobacterium Infections/microbiology/*veterinary, Rats, Rodent Diseases/*microbiology, Streptobacillus/classification/genetics/*isolation & purification | Enzymology |
Phylogeny | 24912824 | Streptobacillus hongkongensis sp. nov., isolated from patients with quinsy and septic arthritis, and emended descriptions of the genus Streptobacillus and Streptobacillus moniliformis. | Woo PCY, Wu AKL, Tsang CC, Leung KW, Ngan AHY, Curreem SOT, Lam KW, Chen JHK, Chan JFW, Lau SKP | Int J Syst Evol Microbiol | 10.1099/ijs.0.061242-0 | 2014 | Adult, Arthritis, Infectious/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Genes, Bacterial, Hong Kong, Humans, Male, Middle Aged, Molecular Sequence Data, Nucleic Acid Hybridization, Peritonsillar Abscess/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purification | Pathogenicity |
Phylogeny | 25858245 | Streptobacillus felis sp. nov., isolated from a cat with pneumonia, and emended descriptions of the genus Streptobacillus and of Streptobacillus moniliformis. | Eisenberg T, Glaeser SP, Nicklas W, Mauder N, Contzen M, Aledelbi K, Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijs.0.000238 | 2015 | Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Felis/*microbiology, Genes, Bacterial, Lung/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pneumonia, Bacterial/*veterinary, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purification | Genetics |
Phylogeny | 26438009 | Streptobacillus notomytis sp. nov., isolated from a spinifex hopping mouse (Notomys alexis Thomas, 1922), and emended description of Streptobacillus Levaditi et al. 1925, Eisenberg et al. 2015 emend. | Eisenberg T, Glaeser SP, Ewers C, Semmler T, Nicklas W, Rau J, Mauder N, Hofmann N, Imaoka K, Kimura M, Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000654 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Heart/microbiology, Japan, Molecular Sequence Data, Murinae/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rats, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purification, Western Australia | Genetics |
Phylogeny | 26705259 | Streptobacillus ratti sp. nov., isolated from a black rat (Rattus rattus). | Eisenberg T, Imaoka K, Kimura M, Glaeser SP, Ewers C, Semmler T, Rau J, Nicklas W, Tanikawa T, Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000869 | 2015 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Japan, Molecular Sequence Data, Mouth/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rats/*microbiology, Sequence Analysis, DNA, Streptobacillus/*classification/genetics/isolation & purification | Genetics |
Phylogeny | 26813893 | Caviibacter abscessus gen. nov., sp. nov., a member of the family Leptotrichiaceae isolated from guinea pigs (Cavia porcellus). | Eisenberg T, Glaeser SP, Ewers C, Semmler T, Drescher B, Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000922 | 2016 | Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Germany, Guinea Pigs/*microbiology, Lymph Nodes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Phylogeny | 27031261 | Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar). | Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer R | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001050 | 2016 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Ireland, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 32209168 | Streptobacillus canis sp. nov. isolated from a dog. | Eisenberg T, Heydel C, Prenger-Berninghoff E, Fawzy A, Kling U, Akimkin V, Semmler T, Muhldorfer K, Kampfer P, Blom J, Ewers C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004086 | 2020 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dogs/*microbiology, Fatty Acids/chemistry, Genes, Bacterial, Germany, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptobacillus/*classification/isolation & purification | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4604 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12112) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12112 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
65645 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 2469) | https://www.ccug.se/strain?id=2469 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68380 | Automatically annotated from API rID32A | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
86859 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36136.1 | StrainInfo: A central database for resolving microbial strain identifiers |