Strain identifier

BacDive ID: 1785

Type strain: Yes

Species: Pararhizobium capsulatum

Strain Designation: 216

Strain history: <- P. Hirsch, IFAM <- M. Müller, 216

NCBI tax ID(s): 1121113 (strain), 34014 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 561

BacDive-ID: 1785

DSM-Number: 1112

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Pararhizobium capsulatum 216 is a mesophilic bacterium that was isolated from eutrophic forest pond.

NCBI tax id

NCBI tax idMatching level
1121113strain
34014species

strain history

  • @ref: 561
  • history: <- P. Hirsch, IFAM <- M. Müller, 216

doi: 10.13145/bacdive1785.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Pararhizobium
  • species: Pararhizobium capsulatum
  • full scientific name: Pararhizobium capsulatum (Hirsch and Müller 1986) Mousavi et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Blastobacter capsulatus

@ref: 561

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Rhizobiaceae

genus: Pararhizobium

species: Pararhizobium capsulatum

full scientific name: Pararhizobium capsulatum (Hirsch and Müller 1986) Mousavi et al. 2016

strain designation: 216

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 561
  • name: PYGV AGAR (DSMZ Medium 621)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/621
  • composition: Name: PYGV AGAR (DSMZ Medium 621) Composition: Agar 15.0 g/l MgSO4 x 7 H2O 0.625264 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.210526 g/l CaCl2 x 2 H2O 0.0703158 g/l FeSO4 x 7 H2O 0.00208422 g/l Na2MoO4 x 2 H2O 0.000266736 g/l Pyridoxine hydrochloride 0.0001 g/l p-Aminobenzoic acid 5e-05 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Metall salt sol. 44 Distilled water

culture temp

  • @ref: 561
  • growth: positive
  • type: growth
  • temperature: 26
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 561
  • sample type: eutrophic forest pond
  • geographic location: Schleswig-Holstein, Kiel near Westensea
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Pond (small)

taxonmaps

  • @ref: 69479
  • File name: preview.99_25478.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_84;97_191;98_214;99_25478&stattab=map
  • Last taxonomy: Pararhizobium capsulatum
  • 16S sequence: X73042
  • Sequence Identity:
  • Total samples: 1811
  • soil counts: 457
  • aquatic counts: 713
  • animal counts: 374
  • plant counts: 267

Safety information

risk assessment

  • @ref: 561
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 561
  • description: Blastobacter capsulatus 16S rRNA gene, strain IFAM 1004
  • accession: X73042
  • length: 1421
  • database: ena
  • NCBI tax ID: 34014

Genome sequences

  • @ref: 66792
  • description: Blastobacter capsulatus DSM 1112
  • accession: 2927149029
  • assembly level: draft
  • database: img
  • NCBI tax ID: 34014

GC content

  • @ref: 561
  • GC-content: 58.9±1.2
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 561

culture collection no.: DSM 1112, ATCC 43294, IFAM 1004

straininfo link

  • @ref: 71432
  • straininfo: 41760

Reference

@idauthorscataloguedoi/urltitle
561Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1112)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1112
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71432Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41760.1StrainInfo: A central database for resolving microbial strain identifiers