General

@ref: 7584

BacDive-ID: 17848

DSM-Number: 18546

keywords: 16S sequence, Bacteria, microaerophile, mesophilic

description: Thioprofundum hispidum gps61 is a microaerophile, mesophilic bacterium that was isolated from rock samples collected from the hydrothermal field.

NCBI tax id

• NCBI tax id: 394805
• Matching level: species

strain history

• @ref: 7584
• history: <- K. Mori, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan; gps61 <- K. Mori and S. Hanada {2003}

doi: 10.13145/bacdive17848.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Chromatiales
• family: Thioprofundaceae
• genus: Thioprofundum
• species: Thioprofundum hispidum
• full scientific name: Thioprofundum hispidum Mori et al. 2011

@ref: 7584

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Thioprofundaceae

genus: Thioprofundum

species: Thioprofundum hispidum

full scientific name: Thioprofundum hispidum Mori et al. 2011

strain designation: gps61

type strain: yes

Culture and growth conditions

culture medium

• @ref: 7584
• name: SULFURIMONAS MJ MEDIUM (DSMZ Medium 1011)
• growth: yes
• link: https://mediadive.dsmz.de/medium/1011
• composition: Name: SULFURIMONAS MJ MEDIUM (DSMZ Medium 1011) Composition: MgCl2 x 6 H2O 4.13452 g/l NaHCO3 1.48368 g/l Na2S2O3 x 5 H2O 1.48368 g/l KCl 0.326409 g/l NH4Cl 0.24728 g/l K2HPO4 0.138477 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.0098912 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l CoSO4 x 7 H2O 0.00178042 g/l ZnSO4 x 7 H2O 0.00178042 g/l CaCl2 x 2 H2O 0.00098912 g/l FeSO4 x 7 H2O 0.00098912 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

• @ref: 7584
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 7584
• oxygen tolerance: microaerophile

Isolation, sampling and environmental information

isolation

• @ref: 7584
• sample type: rock samples collected from the hydrothermal field
• geographic location: Pacific Ocean, Izu-Bonin Arc, Suiyo Seamount
• country: Japan
• origin.country: JPN
• continent: Asia
• latitude: 28.5667
• longitude: 140.65

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_86179.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_159;96_35880;97_45578;98_59653;99_86179&stattab=map
• Last taxonomy: Thioprofundum hispidum
• 16S sequence: AB266389
• Sequence Identity:
• Total samples: 469
• soil counts: 68
• aquatic counts: 386
• animal counts: 7
• plant counts: 8

Safety information

risk assessment

• @ref: 7584
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 7584
• description: Thioprofundum hispidum gene for 16S rRNA, partial sequence
• accession: AB266389
• length: 1525
• database: ena
• NCBI tax ID: 394805

GC content

• @ref: 7584
• GC-content: 62.9
• method: high performance liquid chromatography (HPLC)

External links

@ref: 7584

culture collection no.: DSM 18546, NBRC 101261

straininfo link

• @ref: 86839
• straininfo: 402004

literature

• topic: Phylogeny
• Pubmed-ID: 21075906
• title: Thioprofundum hispidum sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing gammaproteobacterium isolated from the hydrothermal field on Suiyo Seamount, and proposal of Thioalkalispiraceae fam. nov. in the order Chromatiales.
• authors: Mori K, Suzuki KI, Urabe T, Sugihara M, Tanaka K, Hamada M, Hanada S
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.026963-0
• year: 2010
• mesh: Aerobiosis, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Chemoautotrophic Growth, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/ultrastructure, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Hydrothermal Vents/*microbiology, Microscopy, Molecular Sequence Data, Oxidation-Reduction, Pacific Ocean, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfur/*metabolism
• topic2: Genetics

Reference