Strain identifier

BacDive ID: 17830

Type strain: Yes

Species: Parasutterella excrementihominis

Strain history: <- DSM <- H Sakon, Yakult Central Institute for Microbiological Research; YIT 11859 <- M Morotomi and F. Nagai

NCBI tax ID(s): 762966 (strain), 487175 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15533

BacDive-ID: 17830

DSM-Number: 21040

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, ovoid-shaped

description: Parasutterella excrementihominis CCUG 58418 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human faeces .

NCBI tax id

NCBI tax idMatching level
487175species
762966strain

strain history

@refhistory
15533<- H. Sakon, Yakult Central Institute for Microbiological Research; YIT 11859 <- M. Morotomi and F. Nagai
67770M. Morotomi 6-B7 (=YIT 11859).
67771<- DSM <- H Sakon, Yakult Central Institute for Microbiological Research; YIT 11859 <- M Morotomi and F. Nagai

doi: 10.13145/bacdive17830.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Sutterellaceae
  • genus: Parasutterella
  • species: Parasutterella excrementihominis
  • full scientific name: Parasutterella excrementihominis Nagai et al. 2009

@ref: 15533

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Sutterellaceae

genus: Parasutterella

species: Parasutterella excrementihominis

full scientific name: Parasutterella excrementihominis Nagai et al. 2009

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
28954negative1.75 µm0.75 µmovoid-shapedno
67771coccus-shapedno
67771ovoid-shaped
67771negative
69480negative99.999

colony morphology

  • @ref: 15533
  • incubation period: 2-3 days

pigmentation

  • @ref: 28954
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15533BTU MEDIUM (DSMZ Medium 413)yeshttps://mediadive.dsmz.de/medium/413Name: BTU MEDIUM (DSMZ Medium 413) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l Na-formiate 1.8 g/l Na-fumarate 1.8 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Distilled water
15533FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15533positivegrowth37mesophilic
61685positivegrowth37mesophilic
67770positivegrowth37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
15533anaerobe
28954anaerobe
61685anaerobe
67771anaerobe
69480anaerobe99.531

spore formation

@refspore formationconfidence
28954no
67771no
69481no97
69480no99.997

observation

@refobservation
67770quinones: MK-6, MMK-6
67771quinones: MK-6, MMK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
28954acid phosphatase+3.1.3.2
28954alkaline phosphatase+3.1.3.1
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
15533-+/----------------+/---+/-+/--+/-+/-+/-+/---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
15533human faeces (healthy Japanese adult)TokyoJapanJPNAsia
61685Human fecesJapanJPNAsia2007
67770Human feces
67771From human faeces, healthy Japanese adultTokyoJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2076.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_291;96_1142;97_1339;98_1623;99_2076&stattab=map
  • Last taxonomy: Parasutterella excrementihominis subclade
  • 16S sequence: NR_041667
  • Sequence Identity:
  • Total samples: 93433
  • soil counts: 358
  • aquatic counts: 1697
  • animal counts: 91146
  • plant counts: 232

Safety information

risk assessment

  • @ref: 15533
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
15533Parasutterella excrementihominis gene for 16S ribosomal RNA, partial sequenceAB3702501494ena762966
67771Parasutterella excrementihominis strain YIT 11859 16S ribosomal RNA, partial sequenceNR_0416671494nuccore487175

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Parasutterella excrementihominis YIT 11859762966.3wgspatric762966
66792Parasutterella excrementihominis YIT 11859651324084draftimg762966
67771Parasutterella excrementihominis YIT 11859GCA_000205025scaffoldncbi762966

GC content

@refGC-contentmethod
1553349.8high performance liquid chromatography (HPLC)
2895449.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno97no
motileno89.737no
flagellatedno96.039yes
gram-positiveno98.103yes
anaerobicyes95.365yes
halophileno78.362no
spore-formingno97.852yes
glucose-utilno59.438no
aerobicno97.023yes
thermophileno99.482yes
glucose-fermentno73.749no

External links

@ref: 15533

culture collection no.: CCUG 58418, JCM 15078, DSM 21040, KCTC 15162, YIT 11859, CIP 110024

straininfo link

  • @ref: 86821
  • straininfo: 397026

literature

  • topic: Phylogeny
  • Pubmed-ID: 19542131
  • title: Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces.
  • authors: Nagai F, Morotomi M, Sakon H, Tanaka R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.002519-0
  • year: 2009
  • mesh: Alcaligenaceae/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Fatty Acids/analysis, Feces/*microbiology, Genes, rRNA, Genotype, Humans, Japan, Molecular Sequence Data, Phenotype, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15533Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21040)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21040
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
28954Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2539228776041
61685Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 58418)https://www.ccug.se/strain?id=58418
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86821Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397026.1StrainInfo: A central database for resolving microbial strain identifiers