Strain identifier

BacDive ID: 17826

Type strain: Yes

Species: Haloactinopolyspora alba

Strain history: <- S.-K. Tang, YIM; YIM 93246

NCBI tax ID(s): 648780 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15781

BacDive-ID: 17826

DSM-Number: 45211

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Haloactinopolyspora alba DSM 45211 is an aerobe, spore-forming, mesophilic bacterium that was isolated from salt lake.

NCBI tax id

  • NCBI tax id: 648780
  • Matching level: species

strain history

  • @ref: 15781
  • history: <- S.-K. Tang, YIM; YIM 93246

doi: 10.13145/bacdive17826.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Jiangellales
  • family: Jiangellaceae
  • genus: Haloactinopolyspora
  • species: Haloactinopolyspora alba
  • full scientific name: Haloactinopolyspora alba Tang et al. 2011

@ref: 15781

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Jiangellaceae

genus: Haloactinopolyspora

species: Haloactinopolyspora alba

full scientific name: Haloactinopolyspora alba Tang et al. 2011

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
29815positiverod-shapedyes
69480no92.309
69480positive100

multimedia

  • @ref: 15781
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45211.jpg
  • caption: Medium 1302 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15781YIM MEDIUM + 10 % NACL (DSMZ Medium 1302)yeshttps://mediadive.dsmz.de/medium/1302Name: YIM MEDIUM + 10 % NaCl (DSMZ Medium 1302) Composition: NaCl 100.0 g/l Agar 20.0 g/l Yeast extract 2.0 g/l CaCO3 1.0 g/l Glucose 1.0 g/l Tryptone 0.5 g/l Distilled water
15781STARCH-MINERAL SALT-AGAR (STMS) + 10%NACL (DSMZ Medium 1240)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1240.pdf

culture temp

@refgrowthtypetemperaturerange
15781positivegrowth37mesophilic
29815positivegrowth07-23psychrophilic
29815positiveoptimum32.5mesophilic

culture pH

@refabilitytypepHPH range
29815positivegrowth4.0-9.0alkaliphile
29815positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29815
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
29815yes
69481yes100
69480yes98.947

halophily

@refsaltgrowthtested relationconcentration
29815NaClpositivegrowth07-23 %
29815NaClpositiveoptimum12.5 %

observation

  • @ref: 29815
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2981529016arginine+carbon source
2981517057cellobiose+carbon source
2981528757fructose+carbon source
2981527570histidine+carbon source
2981517716lactose+carbon source
2981517306maltose+carbon source
2981537684mannose+carbon source
2981526271proline+carbon source
2981526546rhamnose+carbon source
2981517822serine+carbon source
2981530911sorbitol+carbon source
2981517992sucrose+carbon source
2981526986threonine+carbon source
2981527082trehalose+carbon source
298154853esculin+hydrolysis

enzymes

  • @ref: 29815
  • value: alkaline phosphatase
  • activity: +
  • ec: 3.1.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 15781
  • sample type: salt lake
  • geographic location: Xinjiang Province (43° 26' 48'' N 91° 29' 13'' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 43.4467
  • longitude: 91.4869

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Saline

Safety information

risk assessment

  • @ref: 15781
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15781
  • description: Haloactinopolyspora alba strain YIM 93246 16S ribosomal RNA gene, partial sequence
  • accession: FJ969846
  • length: 1432
  • database: ena
  • NCBI tax ID: 648780

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloactinopolyspora alba YIM 93246GCA_004138525scaffoldncbi648780
66792Haloactinopolyspora alba DSM 45211GCA_003014555contigncbi648780
66792Haloactinopolyspora alba strain DSM 45211648780.3wgspatric648780
66792Haloactinopolyspora alba strain YIM 93246648780.4wgspatric648780
66792Haloactinopolyspora alba DSM 452112728369474draftimg648780

GC content

@refGC-contentmethod
1578170.5high performance liquid chromatography (HPLC)
2981570.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno83.168yes
flagellatedno98.488no
gram-positiveyes92.859yes
anaerobicno98.744yes
aerobicyes94.774no
halophileyes59.408yes
spore-formingyes50.527no
glucose-utilyes88.46no
thermophileno95.645yes
glucose-fermentno87.468no

External links

@ref: 15781

culture collection no.: DSM 45211, KCTC 19409, YIM 93246

straininfo link

  • @ref: 86817
  • straininfo: 402303

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20190023Haloactinopolyspora alba gen. nov., sp. nov., a halophilic filamentous actinomycete isolated from a salt lake, with proposal of Jiangellaceae fam. nov. and Jiangellineae subord. nov.Tang SK, Zhi XY, Wang Y, Shi R, Lou K, Xu LH, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.021725-02010Actinomycetales/*classification/genetics/*isolation & purification/physiology, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Vitamin K 2/analysis, *Water MicrobiologyGenetics
Phylogeny24599896Haloactinopolyspora alkaliphila sp. nov., and emended description of the genus Haloactinopolyspora.Zhang YG, Liu Q, Wang HF, Zhang DF, Zhang YM, Park DJ, Kim CJ, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.062646-02014Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
15781Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45211)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45211
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29815Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2619228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86817Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402303.1StrainInfo: A central database for resolving microbial strain identifiers