Strain identifier
BacDive ID: 17826
Type strain:
Species: Haloactinopolyspora alba
Strain history: <- S.-K. Tang, YIM; YIM 93246
NCBI tax ID(s): 648780 (species)
General
@ref: 15781
BacDive-ID: 17826
DSM-Number: 45211
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Haloactinopolyspora alba DSM 45211 is an aerobe, spore-forming, mesophilic bacterium that was isolated from salt lake.
NCBI tax id
- NCBI tax id: 648780
- Matching level: species
strain history
- @ref: 15781
- history: <- S.-K. Tang, YIM; YIM 93246
doi: 10.13145/bacdive17826.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Jiangellales
- family: Jiangellaceae
- genus: Haloactinopolyspora
- species: Haloactinopolyspora alba
- full scientific name: Haloactinopolyspora alba Tang et al. 2011
@ref: 15781
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Jiangellaceae
genus: Haloactinopolyspora
species: Haloactinopolyspora alba
full scientific name: Haloactinopolyspora alba Tang et al. 2011
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
29815 | positive | rod-shaped | yes | |
69480 | no | 92.309 | ||
69480 | positive | 100 |
multimedia
- @ref: 15781
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45211.jpg
- caption: Medium 1302 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
15781 | YIM MEDIUM + 10 % NACL (DSMZ Medium 1302) | yes | https://mediadive.dsmz.de/medium/1302 | Name: YIM MEDIUM + 10 % NaCl (DSMZ Medium 1302) Composition: NaCl 100.0 g/l Agar 20.0 g/l Yeast extract 2.0 g/l CaCO3 1.0 g/l Glucose 1.0 g/l Tryptone 0.5 g/l Distilled water |
15781 | STARCH-MINERAL SALT-AGAR (STMS) + 10%NACL (DSMZ Medium 1240) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1240.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15781 | positive | growth | 37 | mesophilic |
29815 | positive | growth | 07-23 | psychrophilic |
29815 | positive | optimum | 32.5 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29815 | positive | growth | 4.0-9.0 | alkaliphile |
29815 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 29815
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
29815 | yes | |
69481 | yes | 100 |
69480 | yes | 98.947 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29815 | NaCl | positive | growth | 07-23 % |
29815 | NaCl | positive | optimum | 12.5 % |
observation
- @ref: 29815
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29815 | 29016 | arginine | + | carbon source |
29815 | 17057 | cellobiose | + | carbon source |
29815 | 28757 | fructose | + | carbon source |
29815 | 27570 | histidine | + | carbon source |
29815 | 17716 | lactose | + | carbon source |
29815 | 17306 | maltose | + | carbon source |
29815 | 37684 | mannose | + | carbon source |
29815 | 26271 | proline | + | carbon source |
29815 | 26546 | rhamnose | + | carbon source |
29815 | 17822 | serine | + | carbon source |
29815 | 30911 | sorbitol | + | carbon source |
29815 | 17992 | sucrose | + | carbon source |
29815 | 26986 | threonine | + | carbon source |
29815 | 27082 | trehalose | + | carbon source |
29815 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 29815
- value: alkaline phosphatase
- activity: +
- ec: 3.1.3.1
Isolation, sampling and environmental information
isolation
- @ref: 15781
- sample type: salt lake
- geographic location: Xinjiang Province (43° 26' 48'' N 91° 29' 13'' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 43.4467
- longitude: 91.4869
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Condition | #Saline |
Safety information
risk assessment
- @ref: 15781
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15781
- description: Haloactinopolyspora alba strain YIM 93246 16S ribosomal RNA gene, partial sequence
- accession: FJ969846
- length: 1432
- database: ena
- NCBI tax ID: 648780
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Haloactinopolyspora alba YIM 93246 | GCA_004138525 | scaffold | ncbi | 648780 |
66792 | Haloactinopolyspora alba DSM 45211 | GCA_003014555 | contig | ncbi | 648780 |
66792 | Haloactinopolyspora alba strain DSM 45211 | 648780.3 | wgs | patric | 648780 |
66792 | Haloactinopolyspora alba strain YIM 93246 | 648780.4 | wgs | patric | 648780 |
66792 | Haloactinopolyspora alba DSM 45211 | 2728369474 | draft | img | 648780 |
GC content
@ref | GC-content | method |
---|---|---|
15781 | 70.5 | high performance liquid chromatography (HPLC) |
29815 | 70.5 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 83.168 | yes |
flagellated | no | 98.488 | no |
gram-positive | yes | 92.859 | yes |
anaerobic | no | 98.744 | yes |
aerobic | yes | 94.774 | no |
halophile | yes | 59.408 | yes |
spore-forming | yes | 50.527 | no |
glucose-util | yes | 88.46 | no |
thermophile | no | 95.645 | yes |
glucose-ferment | no | 87.468 | no |
External links
@ref: 15781
culture collection no.: DSM 45211, KCTC 19409, YIM 93246
straininfo link
- @ref: 86817
- straininfo: 402303
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 20190023 | Haloactinopolyspora alba gen. nov., sp. nov., a halophilic filamentous actinomycete isolated from a salt lake, with proposal of Jiangellaceae fam. nov. and Jiangellineae subord. nov. | Tang SK, Zhi XY, Wang Y, Shi R, Lou K, Xu LH, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.021725-0 | 2010 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Vitamin K 2/analysis, *Water Microbiology | Genetics |
Phylogeny | 24599896 | Haloactinopolyspora alkaliphila sp. nov., and emended description of the genus Haloactinopolyspora. | Zhang YG, Liu Q, Wang HF, Zhang DF, Zhang YM, Park DJ, Kim CJ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.062646-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
15781 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45211) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45211 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
29815 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26192 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
86817 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402303.1 | StrainInfo: A central database for resolving microbial strain identifiers |