Strain identifier
BacDive ID: 17824
Type strain: 
Species: Jiangella sp.
Strain history: <- S.-T. Lee; Gsoil 532 <- W.-T. Im
NCBI tax ID(s): 1798224 (species)
version 8.1 (current version)
General
@ref: 12305
BacDive-ID: 17824
DSM-Number: 45060
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Jiangella sp. DSM 45060 is a spore-forming, mesophilic bacterium that was isolated from soil of a ginseng field.
NCBI tax id
- NCBI tax id: 1798224
- Matching level: species
strain history
- @ref: 12305
- history: <- S.-T. Lee; Gsoil 532 <- W.-T. Im
doi: 10.13145/bacdive17824.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Jiangellales
- family: Jiangellaceae
- genus: Jiangella
- species: Jiangella sp.
- full scientific name: Jiangella Song et al. 2005
@ref: 12305
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Jiangellaceae
genus: Jiangella
species: Jiangella sp.
full scientific name: Jiangella sp.
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.593 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12305 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 12305 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 12305
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 95
Isolation, sampling and environmental information
isolation
- @ref: 12305
- sample type: soil of a ginseng field
- geographic location: Daejeon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_3983.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2023;97_2438;98_3015;99_3983&stattab=map
- Last taxonomy: Jiangella
- 16S sequence: AB271058
- Sequence Identity:
- Total samples: 542
- soil counts: 468
- aquatic counts: 23
- animal counts: 40
- plant counts: 11
Sequence information
16S sequences
- @ref: 12305
- description: Jiangella ginsengisoli gene for 16S rRNA, partial sequence
- accession: AB271058
- length: 1458
- database: ena
- NCBI tax ID: 400778
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Jiangella sp. DSM 45060 | GCA_900105175 | chromosome | ncbi | 1798224 |
| 66792 | Jiangella sp. DSM 45060 | 1798224.4 | complete | patric | 1798224 |
| 66792 | Jiangella sp. DSM 45060 | 2634166313 | draft | img | 1798224 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 95 | no |
| motile | no | 83.09 | no |
| gram-positive | yes | 92.994 | no |
| anaerobic | no | 99.141 | no |
| aerobic | yes | 92.572 | no |
| halophile | no | 86.46 | no |
| spore-forming | yes | 64.781 | no |
| glucose-util | yes | 89.959 | no |
| flagellated | no | 97.97 | no |
| thermophile | no | 96.309 | yes |
| glucose-ferment | no | 83.711 | no |
External links
@ref: 12305
culture collection no.: DSM 45060, Gsoil 532
straininfo link
- @ref: 86815
- straininfo: 297513
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12305 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45060) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45060 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 86815 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297513.1 | StrainInfo: A central database for resolving microbial strain identifiers |