Strain identifier

BacDive ID: 17823

Type strain: Yes

Species: Jiangella alba

Culture col. no.: DSM 45237, CCTCC AA 208023, JCM 16901, YIM 61503

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15906

BacDive-ID: 17823

DSM-Number: 45237

keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic, gram-positive

description: Jiangella alba DSM 45237 is an aerobe, mesophilic, gram-positive bacterium that builds an aerial mycelium and was isolated from surface-sterilized healthy stem of the medicinal plant Maytenus austroyunnanensis.

strain history: <- S.-K. Tang, YIM; YIM 61503 <- S. Qin and et al.

doi: 10.13145/bacdive17823.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Jiangellales
  • family: Jiangellaceae
  • genus: Jiangella
  • species: Jiangella alba
  • full scientific name: Jiangella alba Qin et al. 2009

@ref: 15906

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Jiangellaceae

genus: Jiangella

species: Jiangella alba

full scientific name: Jiangella alba Qin et al. 2009

type strain: yes

Morphology

cell morphology

  • @ref: 29229
  • gram stain: positive

colony morphology

@refcolony colorincubation periodmedium used
20186Beige (1001)10-14 daysISP 2
20186Grey white (9002)10-14 daysISP 3
20186Signal white (9003)10-14 daysISP 4
20186Beige (1001)10-14 daysISP 6
20186Beige (1001)10-14 daysISP 7

multicellular morphology

@refforms multicellular complexmedium namecomplex namecomplex color
20186noISP 2
20186yesISP 3Aerial MyceliumGrey white
20186noISP 4
20186yesISP 6Aerial MyceliumLight ivory
20186noISP 7

multimedia

  • @ref: 15906
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45237.jpg
  • caption: Medium 215 28°C
  • license or copyright: (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15906BHI MEDIUM (DSMZ Medium 215)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215.pdf
20186ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20186ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20186ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20186ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20186ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

culture temp

@refgrowthtypetemperaturerange
15906positivegrowth28mesophilic
20186positiveoptimum28mesophilic
29229positivegrowth15-45
29229positiveoptimum28mesophilic

culture pH

@refabilitytypepH
29229positivegrowth6.5-9
29229positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29229
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
29229NaClpositivegrowth0-10 %
29229NaClpositiveoptimum5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2018617234glucose+
2018622599arabinose+
2018617992sucrose+
2018618222xylose+
2018617268myo-inositol-
2018629864mannitol-
2018628757fructose-
2018626546rhamnose+
2018616634raffinose+
2018662968cellulose+
2922922599arabinose+carbon source
2922928757fructose+carbon source
2922917234glucose+carbon source
2922917754glycerol+carbon source
2922917306maltose+carbon source
2922929864mannitol+carbon source
2922937684mannose+carbon source
2922916634raffinose+carbon source
2922926546rhamnose+carbon source
2922933942ribose+carbon source
2922917814salicin+carbon source
2922917992sucrose+carbon source
2922927082trehalose+carbon source
2922918222xylose+carbon source
2922917632nitrate+reduction

enzymes

  • @ref: 29229
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
20186--++-++---++/------+-

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
20186+++++++++++++++--+-

Isolation, sampling and environmental information

isolation

  • @ref: 15906
  • sample type: surface-sterilized healthy stem of the medicinal plant Maytenus austroyunnanensis
  • host species: Maytenus austroyunnanensis
  • geographic location: Yunnan province, Xishuangbanna, tropical rainforest
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Stem (Branch)
#Host Body-Site#Plant#Sterilized plant part

Safety information

risk assessment

  • @ref: 15906
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15906
  • description: Jiangella alba strain YIM 61503 16S ribosomal RNA gene, partial sequence
  • accession: FJ157186
  • length: 1519
  • database: ena
  • NCBI tax ID: 561176

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jiangella alba DSM 45237GCA_900106035contigncbi561176
66792Jiangella alba YIM 61503GCA_001708125scaffoldncbi561176
66792Jiangella alba strain DSM 45237561176.5wgspatric561176
66792Jiangella alba strain YIM 61503561176.4wgspatric561176
66792Jiangella alba DSM 452372630968302permanentimg561176

GC content

@refGC-contentmethod
1590671.9high performance liquid chromatography (HPLC)
2922971.9

External links

@ref: 15906

culture collection no.: DSM 45237, CCTCC AA 208023, JCM 16901, YIM 61503

straininfo link

@refpassport
20218http://www.straininfo.net/strains/844588
20218http://www.straininfo.net/strains/844587
20218http://www.straininfo.net/strains/856469
20218http://www.straininfo.net/strains/844586

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
15906Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45237)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45237
20186Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM45237.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2565010.1099/ijs.0.009001-0
29229Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information25650
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)