Strain identifier

BacDive ID: 17823

Type strain: Yes

Species: Jiangella alba

Strain history: DSM 45237 <-- S.-K. Tang <-- S. Qin et al. YIM 61503.

NCBI tax ID(s): 561176 (species)

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General

@ref: 15906

BacDive-ID: 17823

DSM-Number: 45237

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Jiangella alba DSM 45237 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from surface-sterilized healthy stem of the medicinal plant Maytenus austroyunnanensis.

NCBI tax id

  • NCBI tax id: 561176
  • Matching level: species

strain history

@refhistory
15906<- S.-K. Tang, YIM; YIM 61503 <- S. Qin and et al.
67770DSM 45237 <-- S.-K. Tang <-- S. Qin et al. YIM 61503.

doi: 10.13145/bacdive17823.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Jiangellales
  • family: Jiangellaceae
  • genus: Jiangella
  • species: Jiangella alba
  • full scientific name: Jiangella alba Qin et al. 2009

@ref: 15906

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Jiangellaceae

genus: Jiangella

species: Jiangella alba

full scientific name: Jiangella alba Qin et al. 2009

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
29229positive
69480no92.274
69480positive100

colony morphology

@refcolony colorincubation periodmedium used
20186Beige (1001)10-14 daysISP 2
20186Grey white (9002)10-14 daysISP 3
20186Signal white (9003)10-14 daysISP 4
20186Beige (1001)10-14 daysISP 6
20186Beige (1001)10-14 daysISP 7

multicellular morphology

@refforms multicellular complexmedium namecomplex namecomplex color
20186noISP 2
20186yesISP 3Aerial MyceliumGrey white
20186noISP 4
20186yesISP 6Aerial MyceliumLight ivory
20186noISP 7

multimedia

  • @ref: 15906
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45237.jpg
  • caption: Medium 215 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15906BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
20186ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20186ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20186ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20186ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20186ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
15906ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
15906GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
15906GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15906TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15906positivegrowth28mesophilic
20186positiveoptimum28mesophilic
29229positivegrowth15-45
29229positiveoptimum28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
29229positivegrowth6.5-9alkaliphile
29229positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29229
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69481
  • spore formation: yes
  • confidence: 99

halophily

@refsaltgrowthtested relationconcentration
29229NaClpositivegrowth0-10 %
29229NaClpositiveoptimum5 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2018617234glucose+
2018622599arabinose+
2018617992sucrose+
2018618222xylose+
2018617268myo-inositol-
2018629864mannitol-
2018628757fructose-
2018626546rhamnose+
2018616634raffinose+
2018662968cellulose+
2922922599arabinose+carbon source
2922928757fructose+carbon source
2922917234glucose+carbon source
2922917754glycerol+carbon source
2922917306maltose+carbon source
2922929864mannitol+carbon source
2922937684mannose+carbon source
2922916634raffinose+carbon source
2922926546rhamnose+carbon source
2922933942ribose+carbon source
2922917814salicin+carbon source
2922917992sucrose+carbon source
2922927082trehalose+carbon source
2922918222xylose+carbon source
2922917632nitrate+reduction
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
29229catalase+1.11.1.6
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
20186--++-++---++/------+-

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
20186+++++++++++++++--+-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
15906surface-sterilized healthy stem of the medicinal plant Maytenus austroyunnanensisMaytenus austroyunnanensisYunnan province, Xishuangbanna, tropical rainforestChinaCHNAsia
67770Surface-sterilized stems of Maytenus austroyunnanensis from a tropical rainforestMaytenus austroyunnanensisXishuangbanna, Yunnan Province, south-west ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Stem (Branch)
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_3983.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2023;97_2438;98_3015;99_3983&stattab=map
  • Last taxonomy: Jiangella
  • 16S sequence: FJ157186
  • Sequence Identity:
  • Total samples: 542
  • soil counts: 468
  • aquatic counts: 23
  • animal counts: 40
  • plant counts: 11

Safety information

risk assessment

  • @ref: 15906
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15906
  • description: Jiangella alba strain YIM 61503 16S ribosomal RNA gene, partial sequence
  • accession: FJ157186
  • length: 1519
  • database: ena
  • NCBI tax ID: 561176

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jiangella alba strain DSM 45237561176.5wgspatric561176
66792Jiangella alba strain YIM 61503561176.4wgspatric561176
66792Jiangella alba YIM 615032839637960draftimg561176
66792Jiangella alba DSM 452372630968302draftimg561176
67770Jiangella alba DSM 45237GCA_900106035contigncbi561176
67770Jiangella alba YIM 61503GCA_001708125scaffoldncbi561176

GC content

@refGC-contentmethod
1590671.9high performance liquid chromatography (HPLC)
2922971.9
6777072.84genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
gram-positiveyes91.929yes
anaerobicno99.017yes
halophileno87.382no
spore-formingyes64.795no
glucose-utilyes90.292yes
thermophileno97.758no
aerobicyes90.716no
motileno81.854no
flagellatedno98.077no
glucose-fermentno84.532no

External links

@ref: 15906

culture collection no.: DSM 45237, CCTCC AA 208023, JCM 16901, YIM 61503

straininfo link

  • @ref: 86814
  • straininfo: 402843

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19605701Jiangella alba sp. nov., an endophytic actinomycete isolated from the stem of Maytenus austroyunnanensis.Qin S, Zhao GZ, Li J, Zhu WY, Xu LH, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.009001-02009Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Base Composition, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Maytenus/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysisGenetics
Phylogeny20173006Jiangella muralis sp. nov., from an indoor environment.Kampfer P, Schafer J, Lodders N, Martin KInt J Syst Evol Microbiol10.1099/ijs.0.022277-02010Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, *Environmental Microbiology, Fatty Acids/analysis, Glucose/analysis, Molecular Sequence Data, Mycolic Acids/analysis, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhamnose/analysis, Sequence Analysis, DNAGenetics
Phylogeny25948618Jiangella mangrovi sp. nov., isolated from mangrove soil.Suksaard P, Duangmal K, Srivibool R, Xie Q, Hong K, Pathom-Aree WInt J Syst Evol Microbiol10.1099/ijs.0.0003032015Actinomycetales/*classification/genetics/isolation & purification, Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny29288361Genome sequence and comparative analysis of Jiangella alba YIM 61503(T) isolated from a medicinal plant Maytenus austroyunnanensis.Jiao JY, Salam N, Liu L, Rao MPN, Zhang XT, Fang BZ, Han MX, Zhang ZT, Chen J, Zhao J, Zhou Y, Alkhalifah DHM, Liu Q, Xiao M, Klenk HP, Li WJAntonie Van Leeuwenhoek10.1007/s10482-017-1010-82017Actinobacteria/*classification/*genetics, Computational Biology, DNA, Bacterial/genetics, Genome, Bacterial/*genetics, Maytenus/*microbiology, Models, Biological, *Phylogeny, Plants, Medicinal/*microbiology, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny30603802Jiangella anatolica sp. nov. isolated from coastal lake soil.Ay H, Nouioui I, Carro L, Klenk HP, Cetin D, Igual JM, Sahin N, Isik KAntonie Van Leeuwenhoek10.1007/s10482-018-01222-y2019Actinobacteria/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/*microbiology, Lakes/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, TurkeyMetabolism
Phylogeny32228773Genome-based classification of three novel actinobacteria from the Karakum Desert: Jiangella asiatica sp. nov., Jiangella aurantiaca sp. nov. and Jiangella ureilytica sp. nov.Saygin H, Ay H, Guven K, Sahin NInt J Syst Evol Microbiol10.1099/ijsem.0.0040112020Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkmenistan, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15906Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45237)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45237
20186Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM45237.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29229Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2565028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86814Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402843.1StrainInfo: A central database for resolving microbial strain identifiers