Strain identifier

BacDive ID: 17821

Type strain: Yes

Species: Jiangella gansuensis

Strain history: CIP <- 2005, KCTC <- W.J. Li, Yunnan, China

NCBI tax ID(s): 987045 (strain), 281473 (species)

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General

@ref: 12016

BacDive-ID: 17821

DSM-Number: 44835

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Jiangella gansuensis DSM 44835 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
281473species
987045strain

strain history

@refhistory
12016<- W.-J. Li, YIM <- L. Song
67770KCTC 19044 <-- W.-J. Li YIM 002.
67771<- WJ Li, Yunnam Univ, China
119533CIP <- 2005, KCTC <- W.J. Li, Yunnan, China

doi: 10.13145/bacdive17821.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Jiangellales
  • family: Jiangellaceae
  • genus: Jiangella
  • species: Jiangella gansuensis
  • full scientific name: Jiangella gansuensis Song et al. 2005

@ref: 12016

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Jiangellaceae

genus: Jiangella

species: Jiangella gansuensis

full scientific name: Jiangella gansuensis Song et al. 2005

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31341positiverod-shaped
67771positive
69480no97.217
69480positive100
119533positiverod-shapedno

colony morphology

@refcolony colorincubation periodmedium used
19878Pastel yellow10-14 daysISP 2
19878Pastel yellow10-14 daysISP 3
19878Pastel yellow10-14 daysISP 4
19878Pastel yellow10-14 daysISP 5
19878Pastel yellow10-14 daysISP 6
19878Pastel yellow10-14 daysISP 7
119533

multicellular morphology

@refforms multicellular complexmedium name
19878noISP 2
19878noISP 3
19878noISP 4
19878noISP 5
19878noISP 6
19878noISP 7

pigmentation

  • @ref: 31341
  • production: no

multimedia

@refmultimedia contentcaptionintellectual property rights
12016https://www.dsmz.de/microorganisms/photos/DSM_44835.jpgMedium 65 28°C© Leibniz-Institut DSMZ
66793EM_DSM_44835_1.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12016GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19878ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19878ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19878ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19878ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19878ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19878ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
37631MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
12016GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
12016BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
119533CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperaturerange
12016positivegrowth28mesophilic
19878positiveoptimum28mesophilic
31341positiveoptimum28mesophilic
37631positivegrowth30mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic
119533positivegrowth25-41
119533nogrowth10psychrophilic
119533nogrowth45thermophilic

culture pH

@refabilitytypepH
31341positivegrowth07-08
31341positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31341aerobe
67771aerobe
119533obligate aerobe

spore formation

  • @ref: 31341
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
119533NaClpositivegrowth2-10 %
119533NaClnogrowth0 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3134122599arabinose+carbon source
3134117057cellobiose+carbon source
3134123652dextrin+carbon source
3134128757fructose+carbon source
3134117234glucose+carbon source
3134117754glycerol+carbon source
3134117716lactose+carbon source
3134117306maltose+carbon source
3134129864mannitol+carbon source
3134128053melibiose+carbon source
3134116634raffinose+carbon source
3134126546rhamnose+carbon source
3134117151xylitol+carbon source
3134118222xylose+carbon source
11953316947citrate-carbon source
1195334853esculin-hydrolysis
119533606565hippurate-hydrolysis
11953317632nitrate-reduction
11953316301nitrite-reduction

antibiotic resistance

  • @ref: 119533
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 119533
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11953315688acetoin-
11953317234glucose-

enzymes

@refvalueactivityec
31341urease+3.5.1.5
119533oxidase+
119533beta-galactosidase+3.2.1.23
119533alcohol dehydrogenase-1.1.1.1
119533gelatinase+
119533amylase-
119533DNase-
119533caseinase+3.4.21.50
119533catalase+1.11.1.6
119533tween esterase+
119533gamma-glutamyltransferase+2.3.2.2
119533lecithinase-
119533lipase-
119533lysine decarboxylase-4.1.1.18
119533ornithine decarboxylase-4.1.1.17
119533phenylalanine ammonia-lyase-4.3.1.24
119533tryptophan deaminase-
119533urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
19878++++-+-++++++-++++-
119533+++-++-+++++--+--+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119533++-+-----+++++-+++----++--+----+--++-+---------------------+---------------+-----------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
12016soilGansu ProvinceChinaCHNAsia
67770Desert soilGansu ProvinceChinaCHNAsia
67771From soilChinaCHNAsia
119533Environment, SoilChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_6670.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2023;97_2438;98_3015;99_6670&stattab=map
  • Last taxonomy: Jiangella gansuensis
  • 16S sequence: AY631071
  • Sequence Identity:
  • Total samples: 769
  • soil counts: 425
  • aquatic counts: 42
  • animal counts: 248
  • plant counts: 54

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
120161Risk group (German classification)
198781Risk group (German classification)
1195331Risk group (French classification)

Sequence information

16S sequences

  • @ref: 31341
  • description: Jiangella gansuensis strain YIM 002 16S ribosomal RNA gene, partial sequence
  • accession: AY631071
  • length: 1497
  • database: nuccore
  • NCBI tax ID: 987045

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jiangella gansuensis DSM 44835987045.5wgspatric987045
66792Jiangella gansuensis YIM 002, DSM 448352509601042draftimg987045
67770Jiangella gansuensis DSM 44835GCA_000515395scaffoldncbi987045

GC content

@refGC-contentmethod
1201670
6777070.92genome sequence analysis
6777070thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno73no
motileno86.352no
flagellatedno98.531no
gram-positiveyes93.201yes
anaerobicno98.974yes
halophileno80.239no
spore-formingno57.152yes
thermophileno94.484yes
glucose-utilyes88.499yes
aerobicyes92.953yes
glucose-fermentno88.398no

External links

@ref: 12016

culture collection no.: DSM 44835, CCTCC AA 204001, KCTC 19044, YIM 002, JCM 13367, BCRC 16824, CIP 108735, NCIMB 14350

straininfo link

  • @ref: 86812
  • straininfo: 138009

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15774679Jiangella gansuensis gen. nov., sp. nov., a novel actinomycete from a desert soil in north-west China.Song L, Li WJ, Wang QL, Chen GZ, Zhang YS, Xu LHInt J Syst Evol Microbiol10.1099/ijs.0.63353-02005Actinomycetales/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, *Desert Climate, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny18450709Jiangella alkaliphila sp. nov., an actinobacterium isolated from a cave.Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.65479-02008Actinomycetales/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species SpecificityGenetics
Phylogeny19605701Jiangella alba sp. nov., an endophytic actinomycete isolated from the stem of Maytenus austroyunnanensis.Qin S, Zhao GZ, Li J, Zhu WY, Xu LH, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.009001-02009Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Base Composition, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Maytenus/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysisGenetics
Phylogeny20173006Jiangella muralis sp. nov., from an indoor environment.Kampfer P, Schafer J, Lodders N, Martin KInt J Syst Evol Microbiol10.1099/ijs.0.022277-02010Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, *Environmental Microbiology, Fatty Acids/analysis, Glucose/analysis, Molecular Sequence Data, Mycolic Acids/analysis, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhamnose/analysis, Sequence Analysis, DNAGenetics
Phylogeny25948618Jiangella mangrovi sp. nov., isolated from mangrove soil.Suksaard P, Duangmal K, Srivibool R, Xie Q, Hong K, Pathom-Aree WInt J Syst Evol Microbiol10.1099/ijs.0.0003032015Actinomycetales/*classification/genetics/isolation & purification, Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryGenetics
Genetics28174619Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds.Jiao JY, Carro L, Liu L, Gao XY, Zhang XT, Hozzein WN, Lapidus A, Huntemann M, Reddy TBK, Varghese N, Hadjithomas M, Ivanova NN, Goker M, Pillay M, Eisen JA, Woyke T, Klenk HP, Kyrpides NC, Li WJStand Genomic Sci10.1186/s40793-017-0226-62017
Phylogeny30603802Jiangella anatolica sp. nov. isolated from coastal lake soil.Ay H, Nouioui I, Carro L, Klenk HP, Cetin D, Igual JM, Sahin N, Isik KAntonie Van Leeuwenhoek10.1007/s10482-018-01222-y2019Actinobacteria/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/*microbiology, Lakes/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, TurkeyMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
12016Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44835)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44835
19878Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM44835.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31341Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2765528776041
37631Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6397
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life28604660 35: 676-683 2017
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
86812Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID138009.1StrainInfo: A central database for resolving microbial strain identifiers
119533Curators of the CIPCollection of Institut Pasteur (CIP 108735)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108735