Strain identifier

BacDive ID: 17804

Type strain: Yes

Species: Caldicoprobacter algeriensis

Strain Designation: TH7C1

Strain history: M.-L. Fardeau TH7C1.

NCBI tax ID(s): 699281 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16453

BacDive-ID: 17804

DSM-Number: 22661

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic

description: Caldicoprobacter algeriensis TH7C1 is an anaerobe, thermophilic bacterium that was isolated from hot spring.

NCBI tax id

  • NCBI tax id: 699281
  • Matching level: species

strain history

@refhistory
16453<- M.-L. Fardeau, Lab. Microbiol. de l'IRD, Univ. de Provence et de la Méditerranée, Marseille, France; TH7C1 <- A. Bouanane {2009}
67770M.-L. Fardeau TH7C1.

doi: 10.13145/bacdive17804.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Caldicoprobacteraceae
  • genus: Caldicoprobacter
  • species: Caldicoprobacter algeriensis
  • full scientific name: Caldicoprobacter algeriensis Bouanane-Darenfed et al. 2012

@ref: 16453

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Caldicoprobacteraceae

genus: Caldicoprobacter

species: Caldicoprobacter algeriensis

full scientific name: Caldicoprobacter algeriensis Bouanane-Darenfed et al. 2012

strain designation: TH7C1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 16453
  • name: CALDICOPROBACTER ALGERIENSIS MEDIUM (DSMZ Medium 1292)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1292
  • composition: Name: CALDICOPROBACTER ALGERIENSIS MEDIUM (DSMZ Medium 1292) Composition: D-Glucose 2.5 g/l Na2CO3 2.5 g/l Trypticase peptone 2.0 g/l Yeast extract 2.0 g/l NH4Cl 1.0 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l MgCl2 x 6 H2O 0.5 g/l KH2PO4 0.3 g/l K2HPO4 0.3 g/l Na-acetate 0.2 g/l KCl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16453positivegrowth70thermophilic
67770positivegrowth70thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 16453
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
16453hot springnear Guelma at an altitude of 320 mAlgeriaDZAAfrica36.457.4167
67770Hydrothermal hot spring of Guelma in the northeast of Algeria

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_134784.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3079;96_14245;97_17365;98_89960;99_134784&stattab=map
  • Last taxonomy: Caldicoprobacter algeriensis subclade
  • 16S sequence: GU216701
  • Sequence Identity:
  • Total samples: 13
  • soil counts: 8
  • aquatic counts: 5

Safety information

risk assessment

  • @ref: 16453
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16453
  • description: Caldicoprobacter algeriensis strain TH7C1 16S ribosomal RNA gene, partial sequence
  • accession: GU216701
  • length: 1520
  • database: ena
  • NCBI tax ID: 699281

Genome sequences

  • @ref: 66792
  • description: Caldicoprobacter algeriensis TH7C1
  • accession: GCA_023838525
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 699281

GC content

  • @ref: 16453
  • GC-content: 44.7
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno91.727no
gram-positiveyes78.327no
anaerobicyes98.72no
aerobicno97.957yes
halophileno95.758no
spore-formingyes75.041no
motileyes55.342no
glucose-fermentyes61.54no
thermophileyes100yes
glucose-utilyes90.905no

External links

@ref: 16453

culture collection no.: DSM 22661, JCM 16184

straininfo link

  • @ref: 86796
  • straininfo: 399636

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20981546Caldicoprobacter algeriensis sp. nov. a new thermophilic anaerobic, xylanolytic bacterium isolated from an Algerian hot spring.Bouanane-Darenfed A, Fardeau ML, Gregoire P, Joseph M, Kebbouche-Gana S, Benayad T, Hacene H, Cayol JL, Ollivier BCurr Microbiol10.1007/s00284-010-9789-92010Algeria, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fermentation, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hot Springs/*microbiology, Hot Temperature, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/toxicity, Xylans/*metabolismMetabolism
Phylogeny23041645Caldicoprobacter guelmensis sp. nov., a thermophilic, anaerobic, xylanolytic bacterium isolated from a hot spring.Bouanane-Darenfed A, Ben Hania W, Hacene H, Cayol JL, Ollivier B, Fardeau MLInt J Syst Evol Microbiol10.1099/ijs.0.043497-02012Algeria, Bacteria, Anaerobic/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, Gram-Positive Bacteria/*classification/genetics/isolation & purification, Hot Springs/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Xylans/metabolismEnzymology
Enzymology25161038Partial characterization of xylanase produced by Caldicoprobacter algeriensis, a new thermophilic anaerobic bacterium isolated from an Algerian hot spring.Bouacem K, Bouanane-Darenfed A, Boucherba N, Joseph M, Gagaoua M, Ben Hania W, Kecha M, Benallaoua S, Hacene H, Ollivier B, Fardeau MLAppl Biochem Biotechnol10.1007/s12010-014-1153-22014Algeria, Clostridium/*enzymology, Endo-1,4-beta Xylanases/*chemistry/*isolation & purification, Enzyme Activation, Enzyme Stability, Hot Springs/*microbiology, Hydrogen-Ion Concentration, Substrate Specificity, TemperaturePhylogeny
Enzymology26687892Characterization of a purified thermostable xylanase from Caldicoprobacter algeriensis sp. nov. strain TH7C1(T).Amel BD, Nawel B, Khelifa B, Mohammed G, Manon J, Salima KG, Farida N, Hocine H, Bernard O, Jean-Luc C, Marie-Laure FCarbohydr Res10.1016/j.carres.2015.10.0132015Amino Acid Sequence, Betula/chemistry, Clostridiales/*enzymology, Endo-1,4-beta Xylanases/*chemistry/isolation & purification/*metabolism, Enzyme Stability, Glucuronates/metabolism, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Metals/pharmacology, Molecular Sequence Data, Oligosaccharides/metabolism, Substrate Specificity, Temperature, Xylans/metabolismMetabolism
Enzymology26812107Novel serine keratinase from Caldicoprobacter algeriensis exhibiting outstanding hide dehairing abilities.Bouacem K, Bouanane-Darenfed A, Zarai Jaouadi N, Joseph M, Hacene H, Ollivier B, Fardeau ML, Bejar S, Jaouadi BInt J Biol Macromol10.1016/j.ijbiomac.2016.01.0742016Amino Acid Sequence, Animals, Cattle, Enzyme Inhibitors/pharmacology, Enzyme Stability/drug effects, Firmicutes/*enzymology/isolation & purification, Hair/*metabolism, Hot Springs/microbiology, Hydrolysis, Kinetics, Metals/pharmacology, Peptide Hydrolases/chemistry/isolation & purification/*metabolism, Reducing Agents/pharmacology, Serine/*metabolism, Skin/*metabolism, TemperatureMetabolism
Phylogeny35598016Genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of the thermophilic Caldicoprobacter algeriensis TH7C1(T).Ameri R, Garcia JL, Derenfed AB, Pradel N, Neifar S, Mhiri S, Mezghanni M, Jaouadi NZ, Barriuso J, Bejar SMicrob Cell Fact10.1186/s12934-022-01818-02022Base Composition, Clostridiales, Phylogeny, *Polysaccharides/metabolism, RNA, Ribosomal, 16S, Sequence Analysis, DNAEnzymology

Reference

@idauthorscataloguedoi/urltitle
16453Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22661)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22661
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86796Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399636.1StrainInfo: A central database for resolving microbial strain identifiers