Strain identifier
BacDive ID: 17804
Type strain:
Species: Caldicoprobacter algeriensis
Strain Designation: TH7C1
Strain history: M.-L. Fardeau TH7C1.
NCBI tax ID(s): 699281 (species)
General
@ref: 16453
BacDive-ID: 17804
DSM-Number: 22661
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Caldicoprobacter algeriensis TH7C1 is an anaerobe, thermophilic bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 699281
- Matching level: species
strain history
@ref | history |
---|---|
16453 | <- M.-L. Fardeau, Lab. Microbiol. de l'IRD, Univ. de Provence et de la Méditerranée, Marseille, France; TH7C1 <- A. Bouanane {2009} |
67770 | M.-L. Fardeau TH7C1. |
doi: 10.13145/bacdive17804.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Caldicoprobacteraceae
- genus: Caldicoprobacter
- species: Caldicoprobacter algeriensis
- full scientific name: Caldicoprobacter algeriensis Bouanane-Darenfed et al. 2012
@ref: 16453
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Caldicoprobacteraceae
genus: Caldicoprobacter
species: Caldicoprobacter algeriensis
full scientific name: Caldicoprobacter algeriensis Bouanane-Darenfed et al. 2012
strain designation: TH7C1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 16453
- name: CALDICOPROBACTER ALGERIENSIS MEDIUM (DSMZ Medium 1292)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1292
- composition: Name: CALDICOPROBACTER ALGERIENSIS MEDIUM (DSMZ Medium 1292) Composition: D-Glucose 2.5 g/l Na2CO3 2.5 g/l Trypticase peptone 2.0 g/l Yeast extract 2.0 g/l NH4Cl 1.0 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l MgCl2 x 6 H2O 0.5 g/l KH2PO4 0.3 g/l K2HPO4 0.3 g/l Na-acetate 0.2 g/l KCl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16453 | positive | growth | 70 | thermophilic |
67770 | positive | growth | 70 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 16453
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
16453 | hot spring | near Guelma at an altitude of 320 m | Algeria | DZA | Africa | 36.45 | 7.4167 |
67770 | Hydrothermal hot spring of Guelma in the northeast of Algeria |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_134784.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3079;96_14245;97_17365;98_89960;99_134784&stattab=map
- Last taxonomy: Caldicoprobacter algeriensis subclade
- 16S sequence: GU216701
- Sequence Identity:
- Total samples: 13
- soil counts: 8
- aquatic counts: 5
Safety information
risk assessment
- @ref: 16453
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16453
- description: Caldicoprobacter algeriensis strain TH7C1 16S ribosomal RNA gene, partial sequence
- accession: GU216701
- length: 1520
- database: ena
- NCBI tax ID: 699281
Genome sequences
- @ref: 66792
- description: Caldicoprobacter algeriensis TH7C1
- accession: GCA_023838525
- assembly level: contig
- database: ncbi
- NCBI tax ID: 699281
GC content
- @ref: 16453
- GC-content: 44.7
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 91.727 | no |
gram-positive | yes | 78.327 | no |
anaerobic | yes | 98.72 | no |
aerobic | no | 97.957 | yes |
halophile | no | 95.758 | no |
spore-forming | yes | 75.041 | no |
motile | yes | 55.342 | no |
glucose-ferment | yes | 61.54 | no |
thermophile | yes | 100 | yes |
glucose-util | yes | 90.905 | no |
External links
@ref: 16453
culture collection no.: DSM 22661, JCM 16184
straininfo link
- @ref: 86796
- straininfo: 399636
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 20981546 | Caldicoprobacter algeriensis sp. nov. a new thermophilic anaerobic, xylanolytic bacterium isolated from an Algerian hot spring. | Bouanane-Darenfed A, Fardeau ML, Gregoire P, Joseph M, Kebbouche-Gana S, Benayad T, Hacene H, Cayol JL, Ollivier B | Curr Microbiol | 10.1007/s00284-010-9789-9 | 2010 | Algeria, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fermentation, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Hot Springs/*microbiology, Hot Temperature, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/toxicity, Xylans/*metabolism | Metabolism |
Phylogeny | 23041645 | Caldicoprobacter guelmensis sp. nov., a thermophilic, anaerobic, xylanolytic bacterium isolated from a hot spring. | Bouanane-Darenfed A, Ben Hania W, Hacene H, Cayol JL, Ollivier B, Fardeau ML | Int J Syst Evol Microbiol | 10.1099/ijs.0.043497-0 | 2012 | Algeria, Bacteria, Anaerobic/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, Gram-Positive Bacteria/*classification/genetics/isolation & purification, Hot Springs/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Xylans/metabolism | Enzymology |
Enzymology | 25161038 | Partial characterization of xylanase produced by Caldicoprobacter algeriensis, a new thermophilic anaerobic bacterium isolated from an Algerian hot spring. | Bouacem K, Bouanane-Darenfed A, Boucherba N, Joseph M, Gagaoua M, Ben Hania W, Kecha M, Benallaoua S, Hacene H, Ollivier B, Fardeau ML | Appl Biochem Biotechnol | 10.1007/s12010-014-1153-2 | 2014 | Algeria, Clostridium/*enzymology, Endo-1,4-beta Xylanases/*chemistry/*isolation & purification, Enzyme Activation, Enzyme Stability, Hot Springs/*microbiology, Hydrogen-Ion Concentration, Substrate Specificity, Temperature | Phylogeny |
Enzymology | 26687892 | Characterization of a purified thermostable xylanase from Caldicoprobacter algeriensis sp. nov. strain TH7C1(T). | Amel BD, Nawel B, Khelifa B, Mohammed G, Manon J, Salima KG, Farida N, Hocine H, Bernard O, Jean-Luc C, Marie-Laure F | Carbohydr Res | 10.1016/j.carres.2015.10.013 | 2015 | Amino Acid Sequence, Betula/chemistry, Clostridiales/*enzymology, Endo-1,4-beta Xylanases/*chemistry/isolation & purification/*metabolism, Enzyme Stability, Glucuronates/metabolism, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Metals/pharmacology, Molecular Sequence Data, Oligosaccharides/metabolism, Substrate Specificity, Temperature, Xylans/metabolism | Metabolism |
Enzymology | 26812107 | Novel serine keratinase from Caldicoprobacter algeriensis exhibiting outstanding hide dehairing abilities. | Bouacem K, Bouanane-Darenfed A, Zarai Jaouadi N, Joseph M, Hacene H, Ollivier B, Fardeau ML, Bejar S, Jaouadi B | Int J Biol Macromol | 10.1016/j.ijbiomac.2016.01.074 | 2016 | Amino Acid Sequence, Animals, Cattle, Enzyme Inhibitors/pharmacology, Enzyme Stability/drug effects, Firmicutes/*enzymology/isolation & purification, Hair/*metabolism, Hot Springs/microbiology, Hydrolysis, Kinetics, Metals/pharmacology, Peptide Hydrolases/chemistry/isolation & purification/*metabolism, Reducing Agents/pharmacology, Serine/*metabolism, Skin/*metabolism, Temperature | Metabolism |
Phylogeny | 35598016 | Genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of the thermophilic Caldicoprobacter algeriensis TH7C1(T). | Ameri R, Garcia JL, Derenfed AB, Pradel N, Neifar S, Mhiri S, Mezghanni M, Jaouadi NZ, Barriuso J, Bejar S | Microb Cell Fact | 10.1186/s12934-022-01818-0 | 2022 | Base Composition, Clostridiales, Phylogeny, *Polysaccharides/metabolism, RNA, Ribosomal, 16S, Sequence Analysis, DNA | Enzymology |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16453 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22661) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22661 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
86796 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399636.1 | StrainInfo: A central database for resolving microbial strain identifiers |