Strain identifier

BacDive ID: 17784

Type strain: Yes

Species: Jonquetella anthropi

Strain history: CIP <- 2006, H. Marchandin, Arnaud de Villeneuve Hosp., Montpellier, France: strain ADV126

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16531

BacDive-ID: 17784

DSM-Number: 22815

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped

description: Jonquetella anthropi DSM 22815 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human cyst .

NCBI tax id

NCBI tax idMatching level
885272strain
428712species

strain history

@refhistory
16531<- CCUG; CCUG 53819 <- H. Marchandin, Montpellier, France
400372006, H. Marchandin, Arnaud de Villeneuve Hosp., Montpellier, France: strain ADV126
116412CIP <- 2006, H. Marchandin, Arnaud de Villeneuve Hosp., Montpellier, France: strain ADV126

doi: 10.13145/bacdive17784.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/synergistota
  • domain: Bacteria
  • phylum: Synergistota
  • class: Synergistia
  • order: Synergistales
  • family: Synergistaceae
  • genus: Jonquetella
  • species: Jonquetella anthropi
  • full scientific name: Jonquetella anthropi Jumas-Bilak et al. 2007

@ref: 16531

domain: Bacteria

phylum: Synergistetes

class: Synergistia

order: Synergistales

family: Synergistaceae

genus: Jonquetella

species: Jonquetella anthropi

full scientific name: Jonquetella anthropi Jumas-Bilak et al. 2007

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32260negative1.55 µm0.85 µmrod-shapedno
69480negative99.807
116412negativerod-shapedno

colony morphology

@refincubation period
165313-7 days
600234 days

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_22815_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16531CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
40037MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116412CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20
116412CIP Medium 186yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=186

culture temp

@refgrowthtypetemperaturerange
16531positivegrowth37mesophilic
32260positivegrowth37-42
32260positiveoptimum37mesophilic
40037positivegrowth37mesophilic
60023positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
16531anaerobe
32260anaerobe
60023anaerobe
69480anaerobe99.577
116412anaerobe

spore formation

@refspore formationconfidence
32260no
69480no99.998

halophily

  • @ref: 32260
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 3 %

observation

  • @ref: 32260
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3226030089acetate+carbon source
3226024996lactate+carbon source
3226018401phenylacetate+carbon source
3226017272propionate+carbon source
3226030031succinate+carbon source
3226017632nitrate+reduction
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol+builds acid from
683674853esculin-hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose-builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
11641217632nitrate-reduction
11641216301nitrite-reduction
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
3226016136hydrogen sulfideyes
11641235581indoleno
6838035581indoleno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase+
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367beta-glucosidase-3.2.1.21
68367gelatinase-
68367urease-3.5.1.5
116412catalase-1.11.1.6
116412urease-3.5.1.5

API 20A

@refUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
16531-+---------+-+/------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116412------------------------------------------------+/-

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
16531-----+------------++----++---
16531-------------------+-----+---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
16531human cyst (55 year-old patient)MontpellierFranceFRAEurope
60023Human cyst,55 year-old patientMontpellierFranceFRAEurope2003-08-01
116412Human, CystMontpellierFranceFRAEurope2003

isolation source categories

Cat1Cat2
#Infection#Patient
#Host#Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_1333.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16329;96_772;97_900;98_1056;99_1333&stattab=map
  • Last taxonomy: Jonquetella anthropi subclade
  • 16S sequence: EF436500
  • Sequence Identity:
  • Total samples: 9313
  • soil counts: 182
  • aquatic counts: 308
  • animal counts: 8762
  • plant counts: 61

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165312Risk group (German classification)
1164121Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16531
  • description: Jonquetella anthropi strain ADV126 note type strain of Jonquetella anthropi 16S ribosomal RNA gene, partial sequence
  • accession: EF436500
  • length: 1394
  • database: ena
  • NCBI tax ID: 885272

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jonquetella anthropi DSM 22815GCA_000237805chromosomencbi885272
66792Jonquetella anthropi DSM 22815885272.3wgspatric885272
66792Jonquetella anthropi ADV 126, DSM 228152508501103draftimg885272

GC content

@refGC-contentmethod
1653159.4high performance liquid chromatography (HPLC)
3226059.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno71no
motileno90.967yes
flagellatedno98.365yes
gram-positiveno96.172yes
anaerobicyes99.284yes
aerobicno96.618yes
halophileno70.049no
spore-formingno93.787yes
thermophileno57.751no
glucose-utilyes71.521no
glucose-fermentno61.04no

External links

@ref: 16531

culture collection no.: DSM 22815, CCUG 53819, CIP 109408, ADV 126, AIP 136.05

straininfo link

  • @ref: 86775
  • straininfo: 323248

literature

  • topic: Phylogeny
  • Pubmed-ID: 18048718
  • title: Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man.
  • authors: Jumas-Bilak E, Carlier JP, Jean-Pierre H, Citron D, Bernard K, Damay A, Gay B, Teyssier C, Campos J, Marchandin H
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65213-0
  • year: 2007
  • mesh: Acetic Acid/metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/*isolation & purification, Gram-Negative Bacterial Infections/*microbiology, Hemiterpenes, Humans, Lactic Acid/metabolism, Microscopy, Electron, Transmission, Molecular Sequence Data, Pentanoic Acids/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Succinic Acid/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16531Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22815)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22815
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32260Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2850128776041
40037Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7146
60023Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 53819)https://www.ccug.se/strain?id=53819
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life28604660 35: 676-683 2017
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
68367Automatically annotated from API 20A
68371Automatically annotated from API 50CH acid
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
86775Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID323248.1StrainInfo: A central database for resolving microbial strain identifiers
116412Curators of the CIPCollection of Institut Pasteur (CIP 109408)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109408