Strain identifier
BacDive ID: 17784
Type strain:
Species: Jonquetella anthropi
Strain history: CIP <- 2006, H. Marchandin, Arnaud de Villeneuve Hosp., Montpellier, France: strain ADV126
NCBI tax ID(s): 885272 (strain), 428712 (species)
General
@ref: 16531
BacDive-ID: 17784
DSM-Number: 22815
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped
description: Jonquetella anthropi DSM 22815 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human cyst .
NCBI tax id
NCBI tax id | Matching level |
---|---|
885272 | strain |
428712 | species |
strain history
@ref | history |
---|---|
16531 | <- CCUG; CCUG 53819 <- H. Marchandin, Montpellier, France |
40037 | 2006, H. Marchandin, Arnaud de Villeneuve Hosp., Montpellier, France: strain ADV126 |
116412 | CIP <- 2006, H. Marchandin, Arnaud de Villeneuve Hosp., Montpellier, France: strain ADV126 |
doi: 10.13145/bacdive17784.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/synergistota
- domain: Bacteria
- phylum: Synergistota
- class: Synergistia
- order: Synergistales
- family: Synergistaceae
- genus: Jonquetella
- species: Jonquetella anthropi
- full scientific name: Jonquetella anthropi Jumas-Bilak et al. 2007
@ref: 16531
domain: Bacteria
phylum: Synergistetes
class: Synergistia
order: Synergistales
family: Synergistaceae
genus: Jonquetella
species: Jonquetella anthropi
full scientific name: Jonquetella anthropi Jumas-Bilak et al. 2007
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
32260 | negative | 1.55 µm | 0.85 µm | rod-shaped | no | |
69480 | negative | 99.807 | ||||
116412 | negative | rod-shaped | no |
colony morphology
@ref | incubation period |
---|---|
16531 | 3-7 days |
60023 | 4 days |
multimedia
- @ref: 66793
- multimedia content: EM_DSM_22815_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16531 | CHOPPED MEAT MEDIUM (DSMZ Medium 78) | yes | https://mediadive.dsmz.de/medium/78 | Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water |
40037 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
116412 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 | |
116412 | CIP Medium 186 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=186 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16531 | positive | growth | 37 | mesophilic |
32260 | positive | growth | 37-42 | |
32260 | positive | optimum | 37 | mesophilic |
40037 | positive | growth | 37 | mesophilic |
60023 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
16531 | anaerobe | |
32260 | anaerobe | |
60023 | anaerobe | |
69480 | anaerobe | 99.577 |
116412 | anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
32260 | no | |
69480 | no | 99.998 |
halophily
- @ref: 32260
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 3 %
observation
- @ref: 32260
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32260 | 30089 | acetate | + | carbon source |
32260 | 24996 | lactate | + | carbon source |
32260 | 18401 | phenylacetate | + | carbon source |
32260 | 17272 | propionate | + | carbon source |
32260 | 30031 | succinate | + | carbon source |
32260 | 17632 | nitrate | + | reduction |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | - | builds acid from |
68371 | 17634 | D-glucose | - | builds acid from |
68371 | 12936 | D-galactose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
68367 | 27082 | trehalose | - | builds acid from |
68367 | 62345 | L-rhamnose | - | builds acid from |
68367 | 30911 | sorbitol | - | builds acid from |
68367 | 16634 | raffinose | - | builds acid from |
68367 | 6731 | melezitose | - | builds acid from |
68367 | 17057 | cellobiose | - | builds acid from |
68367 | 17754 | glycerol | + | builds acid from |
68367 | 4853 | esculin | - | hydrolysis |
68367 | 5291 | gelatin | - | hydrolysis |
68367 | 30849 | L-arabinose | - | builds acid from |
68367 | 65327 | D-xylose | - | builds acid from |
68367 | 17814 | salicin | - | builds acid from |
68367 | 17306 | maltose | - | builds acid from |
68367 | 17992 | sucrose | - | builds acid from |
68367 | 17716 | lactose | - | builds acid from |
68367 | 16899 | D-mannitol | - | builds acid from |
68367 | 17634 | D-glucose | + | builds acid from |
68367 | 16199 | urea | - | hydrolysis |
116412 | 17632 | nitrate | - | reduction |
116412 | 16301 | nitrite | - | reduction |
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
32260 | 16136 | hydrogen sulfide | yes |
116412 | 35581 | indole | no |
68380 | 35581 | indole | no |
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | + | |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | - | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
68367 | beta-glucosidase | - | 3.2.1.21 |
68367 | gelatinase | - | |
68367 | urease | - | 3.5.1.5 |
116412 | catalase | - | 1.11.1.6 |
116412 | urease | - | 3.5.1.5 |
API 20A
@ref | URE | GLU | MAN | LAC | SAC | MAL | SAL | XYL | ARA | GEL | ESC | GLY | CEL | MNE | MLZ | RAF | SOR | RHA | TRE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16531 | - | + | - | - | - | - | - | - | - | - | - | + | - | +/- | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116412 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16531 | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | + | + | - | - | - |
16531 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
16531 | human cyst (55 year-old patient) | Montpellier | France | FRA | Europe | ||
60023 | Human cyst,55 year-old patient | Montpellier | France | FRA | Europe | 2003-08-01 | |
116412 | Human, Cyst | Montpellier | France | FRA | Europe | 2003 |
isolation source categories
Cat1 | Cat2 |
---|---|
#Infection | #Patient |
#Host | #Human |
taxonmaps
- @ref: 69479
- File name: preview.99_1333.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16329;96_772;97_900;98_1056;99_1333&stattab=map
- Last taxonomy: Jonquetella anthropi subclade
- 16S sequence: EF436500
- Sequence Identity:
- Total samples: 9313
- soil counts: 182
- aquatic counts: 308
- animal counts: 8762
- plant counts: 61
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
16531 | 2 | Risk group (German classification) |
116412 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 16531
- description: Jonquetella anthropi strain ADV126 note type strain of Jonquetella anthropi 16S ribosomal RNA gene, partial sequence
- accession: EF436500
- length: 1394
- database: ena
- NCBI tax ID: 885272
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Jonquetella anthropi DSM 22815 | GCA_000237805 | chromosome | ncbi | 885272 |
66792 | Jonquetella anthropi DSM 22815 | 885272.3 | wgs | patric | 885272 |
66792 | Jonquetella anthropi ADV 126, DSM 22815 | 2508501103 | draft | img | 885272 |
GC content
@ref | GC-content | method |
---|---|---|
16531 | 59.4 | high performance liquid chromatography (HPLC) |
32260 | 59.4 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 71 | no |
motile | no | 90.967 | yes |
flagellated | no | 98.365 | yes |
gram-positive | no | 96.172 | yes |
anaerobic | yes | 99.284 | yes |
aerobic | no | 96.618 | yes |
halophile | no | 70.049 | no |
spore-forming | no | 93.787 | yes |
thermophile | no | 57.751 | no |
glucose-util | yes | 71.521 | no |
glucose-ferment | no | 61.04 | no |
External links
@ref: 16531
culture collection no.: DSM 22815, CCUG 53819, CIP 109408, ADV 126, AIP 136.05
straininfo link
- @ref: 86775
- straininfo: 323248
literature
- topic: Phylogeny
- Pubmed-ID: 18048718
- title: Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum 'Synergistetes' isolated from man.
- authors: Jumas-Bilak E, Carlier JP, Jean-Pierre H, Citron D, Bernard K, Damay A, Gay B, Teyssier C, Campos J, Marchandin H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65213-0
- year: 2007
- mesh: Acetic Acid/metabolism, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/*isolation & purification, Gram-Negative Bacterial Infections/*microbiology, Hemiterpenes, Humans, Lactic Acid/metabolism, Microscopy, Electron, Transmission, Molecular Sequence Data, Pentanoic Acids/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Succinic Acid/metabolism
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
16531 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22815) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22815 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
32260 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28501 | 28776041 | ||
40037 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7146 | |||||
60023 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 53819) | https://www.ccug.se/strain?id=53819 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 28604660 | 35: 676-683 2017 | ||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
68367 | Automatically annotated from API 20A | ||||||
68371 | Automatically annotated from API 50CH acid | ||||||
68380 | Automatically annotated from API rID32A | ||||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
86775 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID323248.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
116412 | Curators of the CIP | Collection of Institut Pasteur (CIP 109408) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109408 |