Strain identifier
BacDive ID: 17768
Type strain: 
Species: Aminobacterium mobile
Strain Designation: ILE-3
Strain history: <- J.-L. Garcia, Université de Provence, Marseille, France; ILE-3 <- S. Baena {1997}
NCBI tax ID(s): 1304875 (strain), 81467 (species)
version 8.1 (current version)
General
@ref: 4662
BacDive-ID: 17768
DSM-Number: 12262
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Aminobacterium mobile ILE-3 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from anaerobic lagoon in a dairy wastewater treatment plant.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1304875 | strain |
| 81467 | species |
strain history
- @ref: 4662
- history: <- J.-L. Garcia, Université de Provence, Marseille, France; ILE-3 <- S. Baena {1997}
doi: 10.13145/bacdive17768.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/synergistota
- domain: Bacteria
- phylum: Synergistota
- class: Synergistia
- order: Synergistales
- family: Synergistaceae
- genus: Aminobacterium
- species: Aminobacterium mobile
- full scientific name: Aminobacterium mobile Baena et al. 2000
@ref: 4662
domain: Bacteria
phylum: Synergistetes
class: Synergistia
order: Synergistales
family: Synergistaceae
genus: Aminobacterium
species: Aminobacterium mobile
full scientific name: Aminobacterium mobile Baena et al. 2000
strain designation: ILE-3
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.872
Culture and growth conditions
culture medium
- @ref: 4662
- name: AMINOMONAS MEDIUM (DSMZ Medium 846)
- growth: yes
- link: https://mediadive.dsmz.de/medium/846
- composition: Name: AMINOMONAS MEDIUM (DSMZ Medium 846) Composition: Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l L-Serine 1.04686 g/l NaCl 0.997009 g/l Na2S x 9 H2O 0.498504 g/l KCl 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l MgCl2 x 6 H2O 0.398804 g/l KH2PO4 0.299103 g/l NH4Cl 0.299103 g/l K2HPO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 4662
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 4662 | anaerobe | |
| 69480 | anaerobe | 99.695 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.993
Isolation, sampling and environmental information
isolation
- @ref: 4662
- sample type: anaerobic lagoon in a dairy wastewater treatment plant
- country: Colombia
- origin.country: COL
- continent: Middle and South America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Dairy product |
| #Engineered | #Waste | #Water treatment plant |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_50152.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_365;96_22637;97_28298;98_36057;99_50152&stattab=map
- Last taxonomy: Aminobacterium
- 16S sequence: AF073521
- Sequence Identity:
- Total samples: 83
- soil counts: 4
- aquatic counts: 74
- animal counts: 1
- plant counts: 4
Safety information
risk assessment
- @ref: 4662
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4662
- description: Aminobacterium mobilis 16S ribosomal RNA gene, partial sequence
- accession: AF073521
- length: 1453
- database: ena
- NCBI tax ID: 81467
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aminobacterium mobile DSM 12262 | GCA_000526395 | contig | ncbi | 1304875 |
| 66792 | Aminobacterium mobile DSM 12262 | 1304875.3 | wgs | patric | 1304875 |
| 66792 | Aminobacterium mobile DSM 12262 | 2541046969 | draft | img | 1304875 |
GC content
- @ref: 4662
- GC-content: 44
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 81 | no |
| motile | yes | 83.729 | no |
| gram-positive | no | 98.667 | no |
| anaerobic | yes | 99.61 | yes |
| halophile | no | 77.987 | no |
| spore-forming | no | 91.613 | no |
| thermophile | yes | 59.989 | yes |
| glucose-util | yes | 69.594 | no |
| aerobic | no | 98.569 | no |
| flagellated | no | 91.234 | no |
| glucose-ferment | no | 57.822 | no |
External links
@ref: 4662
culture collection no.: DSM 12262, ATCC BAA 7
straininfo link
- @ref: 86759
- straininfo: 44249
literature
- topic: Phylogeny
- Pubmed-ID: 10826812
- title: Aminobacterium mobile sp. nov., a new anaerobic amino-acid-degrading bacterium.
- authors: Baena S, Fardeau ML, Labat M, Ollivier B, Garcia JL, Patel BK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-50-1-259
- year: 2000
- mesh: Amino Acids/*metabolism, Anaerobiosis, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Dairying, Genes, rRNA, Gram-Negative Anaerobic Bacteria/*classification/*metabolism/physiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Waste Disposal, Fluid, Water Microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4662 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12262) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12262 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 86759 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44249.1 | StrainInfo: A central database for resolving microbial strain identifiers |