Strain identifier
BacDive ID: 17766
Type strain:
Species: Hydrotalea sandarakina
Strain Designation: AF-50
Strain history: <- M. da Costa, Univ. Coimbra, Portugal; AF-50 <- L. Albuquerque
NCBI tax ID(s): 1004304 (species)
General
@ref: 16707
BacDive-ID: 17766
DSM-Number: 23242
keywords: Bacteria, thermophilic
description: Hydrotalea sandarakina AF-50 is a thermophilic bacterium that was isolated from water of a hot spring.
NCBI tax id
- NCBI tax id: 1004304
- Matching level: species
strain history
- @ref: 16707
- history: <- M. da Costa, Univ. Coimbra, Portugal; AF-50 <- L. Albuquerque
doi: 10.13145/bacdive17766.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Chitinophagia
- order: Chitinophagales
- family: Chitinophagaceae
- genus: Hydrotalea
- species: Hydrotalea sandarakina
- full scientific name: Hydrotalea sandarakina Albuquerque et al. 2012
@ref: 16707
domain: Bacteria
phylum: Bacteroidetes
class: Chitinophagia
order: Sphingobacteriales
family: Chitinophagaceae
genus: Hydrotalea
species: Hydrotalea sandarakina
full scientific name: Hydrotalea sandarakina Albuquerque et al. 2012
strain designation: AF-50
type strain: no
Culture and growth conditions
culture medium
- @ref: 16707
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 16707
- growth: positive
- type: growth
- temperature: 45
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 16707
- sample type: water of a hot spring
- geographic location: Azores Islands, Island of São Miguel, Furnas area, Área da Fonte 1825
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 16707
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 16707
- GC-content: 35.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 16707
culture collection no.: DSM 23242, LMG 25527
straininfo link
- @ref: 86757
- straininfo: 405802
literature
- topic: Phylogeny
- Pubmed-ID: 21890728
- title: Hydrotalea sandarakina sp. nov., isolated from a hot spring runoff, and emended descriptions of the genus Hydrotalea and the species Hydrotalea flava.
- authors: Albuquerque L, Rainey FA, Nobre MF, da Costa MS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.034496-0
- year: 2011
- mesh: Aerobiosis, Azores, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hot Springs/*microbiology, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
16707 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23242) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23242 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
86757 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405802.1 | StrainInfo: A central database for resolving microbial strain identifiers |