Strain identifier

BacDive ID: 17766

Type strain: No

Species: Hydrotalea sandarakina

Strain Designation: AF-50

Strain history: <- M. da Costa, Univ. Coimbra, Portugal; AF-50 <- L. Albuquerque

NCBI tax ID(s): 1004304 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 16707

BacDive-ID: 17766

DSM-Number: 23242

keywords: Bacteria, thermophilic

description: Hydrotalea sandarakina AF-50 is a thermophilic bacterium that was isolated from water of a hot spring.

NCBI tax id

  • NCBI tax id: 1004304
  • Matching level: species

strain history

  • @ref: 16707
  • history: <- M. da Costa, Univ. Coimbra, Portugal; AF-50 <- L. Albuquerque

doi: 10.13145/bacdive17766.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Hydrotalea
  • species: Hydrotalea sandarakina
  • full scientific name: Hydrotalea sandarakina Albuquerque et al. 2012

@ref: 16707

domain: Bacteria

phylum: Bacteroidetes

class: Chitinophagia

order: Sphingobacteriales

family: Chitinophagaceae

genus: Hydrotalea

species: Hydrotalea sandarakina

full scientific name: Hydrotalea sandarakina Albuquerque et al. 2012

strain designation: AF-50

type strain: no

Culture and growth conditions

culture medium

  • @ref: 16707
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 16707
  • growth: positive
  • type: growth
  • temperature: 45
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 16707
  • sample type: water of a hot spring
  • geographic location: Azores Islands, Island of São Miguel, Furnas area, Área da Fonte 1825
  • country: Portugal
  • origin.country: PRT
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 16707
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

  • @ref: 16707
  • GC-content: 35.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 16707

culture collection no.: DSM 23242, LMG 25527

straininfo link

  • @ref: 86757
  • straininfo: 405802

literature

  • topic: Phylogeny
  • Pubmed-ID: 21890728
  • title: Hydrotalea sandarakina sp. nov., isolated from a hot spring runoff, and emended descriptions of the genus Hydrotalea and the species Hydrotalea flava.
  • authors: Albuquerque L, Rainey FA, Nobre MF, da Costa MS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.034496-0
  • year: 2011
  • mesh: Aerobiosis, Azores, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hot Springs/*microbiology, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16707Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23242)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23242
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
86757Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID405802.1StrainInfo: A central database for resolving microbial strain identifiers