Strain identifier

BacDive ID: 17729

Type strain: Yes

Species: Actinopolyspora alba

Strain history: <- S.-K. Tang; YIM 90480

NCBI tax ID(s): 673379 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 12236

BacDive-ID: 17729

DSM-Number: 45004

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Actinopolyspora alba DSM 45004 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil from a salt field.

NCBI tax id

  • NCBI tax id: 673379
  • Matching level: species

strain history

  • @ref: 12236
  • history: <- S.-K. Tang; YIM 90480

doi: 10.13145/bacdive17729.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinopolyspora
  • species: Actinopolyspora alba
  • full scientific name: Actinopolyspora alba Tang et al. 2011

@ref: 12236

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinopolysporaceae

genus: Actinopolyspora

species: Actinopolyspora alba

full scientific name: Actinopolyspora alba Tang et al. 2011

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.217
69480100positive

colony morphology

@refcolony colormedium used
69370Ochre yellow (1024)ISP 2
69370Ochre yellow (1024)ISP 4
69370Ochre yellow (1024)ISP 6
69370Oyster white (1013)ISP 5
69370Oyster white (1013)ISP 7
69370Oyster white (1013)suter with tyrosine
69370Oyster white (1013)suter without tyrosine

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69370yesAerial myceliumTraffic white (9016)ISP 2
69370yesAerial myceliumTraffic white (9016)ISP 4
69370noAerial myceliumISP 5
69370yesAerial myceliumTraffic white (9016)ISP 6
69370noAerial myceliumISP 7
69370noAerial myceliumsuter with tyrosine
69370noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69370noMelanin
69370nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
12236https://www.dsmz.de/microorganisms/photos/DSM_45004.jpgMedium 1241 37°C© Leibniz-Institut DSMZ
69370DSM_45004_image3.jpegPlates (1241, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69370DSM_45004_image4.jpegPlates (1241, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12236STARCH-MINERAL SALT-AGAR (STMS) + 15% NACL (DSMZ Medium 1241)yeshttps://mediadive.dsmz.de/medium/1241Name: STARCH - MINERAL SALT - AGAR (STMS) + 15% NaCl (DSMZ Medium 1241) Composition: NaCl 150.0 g/l Agar 15.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
12236STARCH-MINERAL SALT-AGAR (STMS) + 10%NACL (DSMZ Medium 1240)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1240.pdf

culture temp

  • @ref: 12236
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes96
69480yes100

halophily

  • @ref: 69370
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 5-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6937022599arabinose-growth
6937062968cellulose-growth
6937028757fructose+growth
6937017234glucose+growth
6937017268inositol-growth
6937037684mannose+growth
6937016634raffinose-growth
6937026546rhamnose-growth
6937017992sucrose-growth
6937018222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69370---+--++--+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69370++++/-++/---------+/--+--

Isolation, sampling and environmental information

isolation

  • @ref: 12236
  • sample type: soil from a salt field
  • geographic location: Xinjiang Province, Baicheng salt field
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Condition#Saline

Safety information

risk assessment

  • @ref: 12236
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 12236
  • description: Actinopolyspora alba strain YIM 90480 16S ribosomal RNA gene, partial sequence
  • accession: GQ480940
  • length: 1543
  • database: ena
  • NCBI tax ID: 673379

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinopolyspora alba DSM 45004GCA_900112765scaffoldncbi673379
66792Actinopolyspora alba strain DSM 45004673379.3wgspatric673379
66792Actinopolyspora alba DSM 450042619619028draftimg673379

GC content

  • @ref: 12236
  • GC-content: 68.3
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes96no
motileno91.707no
flagellatedno97.075no
gram-positiveyes90.217no
anaerobicno98.771no
aerobicyes88.969no
halophileyes68.681no
spore-formingyes80.568no
glucose-fermentno88.96yes
thermophileno92.616no
glucose-utilyes88.982no

External links

@ref: 12236

culture collection no.: DSM 45004, KCTC 19119, YIM 90480

straininfo link

  • @ref: 86719
  • straininfo: 297481

literature

  • topic: Phylogeny
  • Pubmed-ID: 20729305
  • title: Actinopolyspora alba sp. nov. and Actinopolyspora erythraea sp. nov., isolated from a salt field, and reclassification of Actinopolyspora iraqiensis Ruan et al. 1994 as a heterotypic synonym of Saccharomonospora halophila.
  • authors: Tang SK, Wang Y, Klenk HP, Shi R, Lou K, Zhang YJ, Chen C, Ruan JS, Li WJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.022319-0
  • year: 2010
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salts/chemistry, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
12236Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45004)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45004
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69370Wink, J.https://cdn.dsmz.de/wink/DSM%2045004.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86719Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297481.1StrainInfo: A central database for resolving microbial strain identifiers