Strain identifier
BacDive ID: 17722
Type strain: 
Species: Actinopolyspora mortivallis
Strain Designation: HS-1
Strain history: M. Yoshida HS-1.
NCBI tax ID(s): 1050202 (strain), 33906 (species)
version 8.1 (current version)
General
@ref: 11633
BacDive-ID: 17722
DSM-Number: 44261
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic
description: Actinopolyspora mortivallis HS-1 is a spore-forming, thermophilic bacterium that was isolated from soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1050202 | strain |
| 33906 | species |
strain history
| @ref | history |
|---|---|
| 11633 | <- IFO <- JCM <- M. Yoshida, HS-1 |
| 67770 | M. Yoshida HS-1. |
doi: 10.13145/bacdive17722.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinopolyspora
- species: Actinopolyspora mortivallis
- full scientific name: Actinopolyspora mortivallis Yoshida et al. 1991
@ref: 11633
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinopolysporaceae
genus: Actinopolyspora
species: Actinopolyspora mortivallis
full scientific name: Actinopolyspora mortivallis Yoshida et al. 1991
strain designation: HS-1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 96.444 | |
| 69480 | 100 | positive |
colony morphology
- @ref: 20034
- medium used: 5450 (IFO medium for Actinopolyspora mortivallis)
multimedia
- @ref: 11633
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44261.jpg
- caption: Medium 1159 45°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11633 | GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) | yes | https://mediadive.dsmz.de/medium/1159 | Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 11633 | CM + YE MEDIUM (DSMZ Medium 549) | yes | https://mediadive.dsmz.de/medium/549 | Name: CM + YE MEDIUM (DSMZ Medium 549) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.01 g/l HCl 3.646e-05 g/l Distilled water |
| 20034 | 5450 (IFO medium for Actinopolyspora mortivallis) | yes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11633 | positive | growth | 45 | thermophilic |
| 20034 | positive | optimum | 45 | thermophilic |
| 67770 | positive | growth | 45 | thermophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 98.878 |
halophily
- @ref: 20034
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 2.5 %
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-10(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 11633 | soil | California, Death Valley | USA | USA | North America |
| 67770 | Salty soil | Death Valley, CA | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_4877.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_495;96_2401;97_2923;98_3651;99_4877&stattab=map
- Last taxonomy: Actinopolyspora
- 16S sequence: DQ883812
- Sequence Identity:
- Total samples: 67
- soil counts: 11
- aquatic counts: 8
- animal counts: 48
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 11633 | 1 | Risk group (German classification) |
| 20034 | 1 | German classification |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Actinopolyspora mortivallis strain DSM 44261 16S ribosomal RNA gene, partial sequence | DQ883812 | 1468 | ena | 1050202 |
| 20218 | A.mortivallis 16S rRNA | Z22730 | 1374 | ena | 1050202 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinopolyspora mortivallis DSM 44261 strain HS-1 | 1050202.3 | wgs | patric | 1050202 |
| 66792 | Actinopolyspora mortivallis HS-1, DSM 44261 | 2516493031 | draft | img | 1050202 |
| 67770 | Actinopolyspora mortivallis DSM 44261 HS-1 | GCA_000384035 | scaffold | ncbi | 1050202 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 11633 | 68.0 | |
| 67770 | 68 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 92.499 | no |
| flagellated | no | 97.48 | no |
| gram-positive | yes | 92.429 | no |
| anaerobic | no | 98.471 | no |
| aerobic | yes | 89.013 | no |
| halophile | yes | 78.313 | no |
| spore-forming | yes | 75.692 | no |
| thermophile | no | 88.299 | yes |
| glucose-util | yes | 89.16 | no |
| glucose-ferment | no | 86.166 | no |
External links
@ref: 11633
culture collection no.: DSM 44261, ATCC 49777, CCRC 13635, IFO 15162, JCM 7550, NBRC 15162, NCIMB 13257, BCRC 13635, CGMCC 4.5630, IMSNU 22093, KCTC 9196, KCTC 9351, VKM Ac-1974
straininfo link
- @ref: 86713
- straininfo: 42680
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23196893 | Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria. | Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9859-z | 2012 | Actinomycetales/*classification/growth & development/*isolation & purification, Algeria, Bacterial Typing Techniques, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, Vitamin K 2/analysis | Genetics |
| Phylogeny | 23754661 | Actinopolyspora righensis sp. nov., a novel halophilic actinomycete isolated from Saharan soil in Algeria. | Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9948-7 | 2013 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Africa, Northern, Algeria, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature | Genetics |
| Phylogeny | 23912445 | Actinopolyspora dayingensis sp. nov., a novel halophilic actinomycete isolated from a hypersaline lake. | Guan TW, Zhao HP, Che ZM, Zhang XP, Zhang LL | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9988-z | 2013 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Metabolism |
| Phylogeny | 26050246 | Bounagaea algeriensis gen. nov., sp. nov., an extremely halophilic actinobacterium isolated from a Saharan soil of Algeria. | Meklat A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Klenk HP, Sabaou N | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0500-9 | 2015 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Algeria, Arabinose/analysis, Base Composition, Cell Wall/chemistry, Cluster Analysis, Culture Media/chemistry, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Galactose/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/growth & development, Temperature, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11633 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44261) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44261 | |||
| 20034 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM44261.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86713 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42680.1 | StrainInfo: A central database for resolving microbial strain identifiers |