Strain identifier
BacDive ID: 17720
Type strain: 
Species: Fontibacter flavus
Strain Designation: CC-GZM-130
Strain history: <- P. Kämpfer, Univ. Giessen, Germany <- A. B. Arun; CC-GZM-130
NCBI tax ID(s): 654838 (species)
version 8.1 (current version)
General
@ref: 16224
BacDive-ID: 17720
DSM-Number: 22241
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Fontibacter flavus CC-GZM-130 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water with temperatures from 45 to 65 °C.
NCBI tax id
- NCBI tax id: 654838
- Matching level: species
strain history
- @ref: 16224
- history: <- P. Kämpfer, Univ. Giessen, Germany <- A. B. Arun; CC-GZM-130
doi: 10.13145/bacdive17720.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Cyclobacteriaceae
- genus: Fontibacter
- species: Fontibacter flavus
- full scientific name: Fontibacter flavus Kämpfer et al. 2010
@ref: 16224
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Cyclobacteriaceae
genus: Fontibacter
species: Fontibacter flavus
full scientific name: Fontibacter flavus Kämpfer et al. 2010
strain designation: CC-GZM-130
type strain: yes
Morphology
cell morphology
- @ref: 29624
- gram stain: negative
- cell length: 1.5-3 µm
- cell width: 0.3-0.5 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 61421
- incubation period: 1 day
pigmentation
- @ref: 29624
- production: yes
Culture and growth conditions
culture medium
- @ref: 16224
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16224 | positive | growth | 37 | mesophilic |
| 29624 | positive | growth | 25-40 | |
| 29624 | positive | optimum | 30 | mesophilic |
| 61421 | positive | growth | 37 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29624 | positive | growth | 7 |
| 29624 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 29624 | aerobe |
| 61421 | aerobe |
spore formation
- @ref: 29624
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29624 | NaCl | positive | growth | 01-03 % |
| 29624 | NaCl | positive | optimum | 01-03 % |
observation
- @ref: 29624
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29624 | 17306 | maltose | + | carbon source |
| 29624 | 28053 | melibiose | + | carbon source |
| 29624 | 506227 | N-acetylglucosamine | + | carbon source |
| 29624 | 17814 | salicin | + | carbon source |
| 29624 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 29624
- value: cytochrome oxidase
- activity: +
- ec: 1.9.3.1
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16224 | water with temperatures from 45 to 65 °C | Guan-zing-ling hot spring | Taiwan | TWN | Asia |
| 61421 | Water,hot spring | Guan-zing-ling | Taiwan | TWN | Asia |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Aquatic |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_37001.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15774;96_17617;97_21703;98_27236;99_37001&stattab=map
- Last taxonomy: Fontibacter
- 16S sequence: FN421478
- Sequence Identity:
- Total samples: 144
- soil counts: 26
- aquatic counts: 91
- animal counts: 23
- plant counts: 4
Safety information
risk assessment
- @ref: 16224
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16224
- description: Fontibacter flavus partial 16S rRNA gene, type strain CC-GZM-130T
- accession: FN421478
- length: 1418
- database: ena
- NCBI tax ID: 654838
Genome sequences
- @ref: 66792
- description: Fontibacter flavus DSM 22241
- accession: 2596583521
- assembly level: draft
- database: img
- NCBI tax ID: 654838
GC content
- @ref: 16224
- GC-content: 53.2
External links
@ref: 16224
culture collection no.: DSM 22241, CCM 7650, CCUG 57694
straininfo link
- @ref: 86711
- straininfo: 370652
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19819991 | Fontibacter flavus gen. nov., sp. nov., a member of the family 'Cyclobacteriaceae', isolated from a hot spring. | Kampfer P, Young CC, Chen WM, Rekha PD, Fallschissel K, Lodders N, Chou JH, Shen FT, Frischmann A, Busse HJ, Arun AB | Int J Syst Evol Microbiol | 10.1099/ijs.0.017210-0 | 2009 | Bacteroidetes/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Hot Springs/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
| Phylogeny | 22659503 | Fontibacter ferrireducens sp. nov., an Fe(III)-reducing bacterium isolated from a microbial fuel cell. | Zhang J, Yang G, Zhou S, Wang Y, Yuan Y, Zhuang L | Int J Syst Evol Microbiol | 10.1099/ijs.0.040998-0 | 2012 | Bacterial Typing Techniques, Base Composition, Bioelectric Energy Sources/*microbiology, Cytophagaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Ferric Compounds/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16224 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22241) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22241 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29624 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26014 | 28776041 | |
| 61421 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 57694) | https://www.ccug.se/strain?id=57694 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86711 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID370652.1 | StrainInfo: A central database for resolving microbial strain identifiers |