Strain identifier
BacDive ID: 17713
Type strain: 
Species: Algoriphagus faecimaris
Strain Designation: LYX05
Strain history: Z. Qi LYX05.
NCBI tax ID(s): 686796 (species)
version 8.1 (current version)
General
@ref: 16576
BacDive-ID: 17713
DSM-Number: 23095
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Algoriphagus faecimaris LYX05 is a mesophilic bacterium that was isolated from coastal sediment.
NCBI tax id
- NCBI tax id: 686796
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16576 | <- Z. Qi, Ocean Univ. China, Qingdao, P. R. China; LYX05 <- Y. Li |
| 67770 | Z. Qi LYX05. |
doi: 10.13145/bacdive17713.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Cyclobacteriaceae
- genus: Algoriphagus
- species: Algoriphagus faecimaris
- full scientific name: Algoriphagus faecimaris Li et al. 2011
@ref: 16576
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Cyclobacteriaceae
genus: Algoriphagus
species: Algoriphagus faecimaris
full scientific name: Algoriphagus faecimaris Li et al. 2011
strain designation: LYX05
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.363 | |
| 69480 | 99.996 | negative |
Culture and growth conditions
culture medium
- @ref: 16576
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16576 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.996 |
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 16576 | coastal sediment | Yellow Sea coast, Jiaozhou Bay at Qingdao (36° 09' N 120' 21° E) | China | CHN | Asia | 36.15 | 120.35 |
| 67770 | Coastal sediment at Qingdao | coast of the Yellow Sea | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_23224.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15774;96_11736;97_14192;98_17509;99_23224&stattab=map
- Last taxonomy: Algoriphagus faecimaris subclade
- 16S sequence: GU072591
- Sequence Identity:
- Total samples: 94
- soil counts: 8
- aquatic counts: 77
- animal counts: 8
- plant counts: 1
Safety information
risk assessment
- @ref: 16576
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16576
- description: Algoriphagus faecimaris strain LYX05 16S ribosomal RNA gene, partial sequence
- accession: GU072591
- length: 1397
- database: ena
- NCBI tax ID: 686796
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Algoriphagus faecimaris strain DSM 23095 | 686796.3 | wgs | patric | 686796 |
| 66792 | Algoriphagus faecimaris strain JCM 16561 | 686796.5 | wgs | patric | 686796 |
| 66792 | Algoriphagus faecimaris DSM 23095 | 2622736587 | draft | img | 686796 |
| 67770 | Algoriphagus faecimaris DSM 23095 | GCA_900101705 | scaffold | ncbi | 686796 |
| 67770 | Algoriphagus faecimaris JCM 16561 | GCA_002150585 | contig | ncbi | 686796 |
GC content
- @ref: 16576
- GC-content: 42.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 97.921 | no |
| anaerobic | no | 97.828 | no |
| halophile | no | 77.652 | no |
| spore-forming | no | 94.965 | no |
| glucose-util | yes | 84.813 | no |
| thermophile | no | 98.212 | yes |
| flagellated | no | 97.436 | no |
| motile | no | 93.901 | no |
| aerobic | yes | 85.125 | no |
| glucose-ferment | no | 89.151 | no |
External links
@ref: 16576
culture collection no.: DSM 23095, JCM 16561, LMG 25474
straininfo link
- @ref: 86704
- straininfo: 396735
literature
- topic: Phylogeny
- Pubmed-ID: 21257690
- title: Algoriphagus faecimaris sp. nov., isolated from coastal sediment.
- authors: Li Y, Yan S, Yang Q, Qi Z, Zhang XH, Fu YB
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.027862-0
- year: 2011
- mesh: Base Composition, China, Cytophagaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16576 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23095) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23095 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 86704 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID396735.1 | StrainInfo: A central database for resolving microbial strain identifiers |