Strain identifier

BacDive ID: 17707

Type strain: Yes

Species: Algoriphagus locisalis

Strain Designation: MSS-170

Strain history: <- Jung-Hoon Yoon, KRIBB

NCBI tax ID(s): 305507 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17213

BacDive-ID: 17707

DSM-Number: 23445

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Algoriphagus locisalis MSS-170 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 305507
  • Matching level: species

strain history

@refhistory
67770J.-H. Yoon MSS-170.
67771<- Jung-Hoon Yoon, KRIBB

doi: 10.13145/bacdive17707.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Algoriphagus
  • species: Algoriphagus locisalis
  • full scientific name: Algoriphagus locisalis Yoon et al. 2005

@ref: 17213

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Algoriphagus

species: Algoriphagus locisalis

full scientific name: Algoriphagus locisalis Yoon et al. 2005

strain designation: MSS-170

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31457negative2.25 µm0.55 µmrod-shapedno
67771rod-shapedno
67771negative
69480no92.183
69480negative99.989

pigmentation

  • @ref: 31457
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17213
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17213positivegrowth28mesophilic
31457positivegrowth04-35
31457positiveoptimum30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
31457positivegrowth5.5-8
31457positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31457aerobe
67771aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.981

halophily

@refsaltgrowthtested relationconcentration
31457NaClpositivegrowth0-9 %
31457NaClpositiveoptimum2 %

observation

@refobservation
31457aggregates in clumps
67770quinones: MK-7
67771quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3145722599arabinose+carbon source
3145717057cellobiose+carbon source
3145728757fructose+carbon source
3145728260galactose+carbon source
3145717234glucose+carbon source
3145717716lactose+carbon source
3145717306maltose+carbon source
3145737684mannose+carbon source
3145728053melibiose+carbon source
3145716634raffinose+carbon source
3145726546rhamnose+carbon source
3145717814salicin+carbon source
3145717992sucrose+carbon source
3145727082trehalose+carbon source
3145753424tween 20+carbon source
3145753423tween 40+carbon source
3145753425tween 60+carbon source
3145753426tween 80+carbon source
3145718222xylose+carbon source
314574853esculin+hydrolysis

enzymes

@refvalueactivityec
31457catalase+1.11.1.6
31457cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
31457seawater
67770Seawater of a marine solar saltern of the Yellow SeaRepublic of KoreaKORAsia
67771From sea water, marine solar salternRepublic of KoreaKORAsiathe Yellow Sea

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

  • @ref: 17213
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 31457
  • description: Algoriphagus locisalis strain MSS-170 16S ribosomal RNA gene, partial sequence
  • accession: AY835922
  • length: 1477
  • database: nuccore
  • NCBI tax ID: 305507

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Algoriphagus locisalis strain DSM 23445305507.7wgspatric305507
66792Algoriphagus locisalis DSM 234452639762564draftimg305507
67770Algoriphagus locisalis DSM 23445GCA_900116615scaffoldncbi305507

GC content

@refGC-contentmethod
3145742
6777042high performance liquid chromatography (HPLC)
6777142.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno97.96no
anaerobicno98.926no
halophileno64.313no
spore-formingno95.003no
glucose-utilyes91.185no
motileno91.856no
flagellatedno97.572yes
aerobicyes89.405no
thermophileno98.962yes
glucose-fermentno90.757no

External links

@ref: 17213

culture collection no.: DSM 23445, KCTC 12310, JCM 12597, CIP 108874

straininfo link

  • @ref: 86698
  • straininfo: 232815

literature

  • topic: Phylogeny
  • Pubmed-ID: 16014494
  • title: Algoriphagus locisalis sp. nov., isolated from a marine solar saltern.
  • authors: Yoon JH, Kang SJ, Oh TK
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63605-0
  • year: 2005
  • mesh: Bacterial Typing Techniques, Cytophagaceae/chemistry/*classification/genetics/isolation & purification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, *Sodium Chloride
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17213Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23445)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23445
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31457Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2775928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86698Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID232815.1StrainInfo: A central database for resolving microbial strain identifiers