Strain identifier
BacDive ID: 17707
Type strain:
Species: Algoriphagus locisalis
Strain Designation: MSS-170
Strain history: <- Jung-Hoon Yoon, KRIBB
NCBI tax ID(s): 305507 (species)
General
@ref: 17213
BacDive-ID: 17707
DSM-Number: 23445
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Algoriphagus locisalis MSS-170 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 305507
- Matching level: species
strain history
@ref | history |
---|---|
67770 | J.-H. Yoon MSS-170. |
67771 | <- Jung-Hoon Yoon, KRIBB |
doi: 10.13145/bacdive17707.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Cyclobacteriaceae
- genus: Algoriphagus
- species: Algoriphagus locisalis
- full scientific name: Algoriphagus locisalis Yoon et al. 2005
@ref: 17213
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Cyclobacteriaceae
genus: Algoriphagus
species: Algoriphagus locisalis
full scientific name: Algoriphagus locisalis Yoon et al. 2005
strain designation: MSS-170
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
31457 | negative | 2.25 µm | 0.55 µm | rod-shaped | no | |
67771 | rod-shaped | no | ||||
67771 | negative | |||||
69480 | no | 92.183 | ||||
69480 | negative | 99.989 |
pigmentation
- @ref: 31457
- production: yes
Culture and growth conditions
culture medium
- @ref: 17213
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17213 | positive | growth | 28 | mesophilic |
31457 | positive | growth | 04-35 | |
31457 | positive | optimum | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
67771 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
31457 | positive | growth | 5.5-8 |
31457 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31457 | aerobe |
67771 | aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.981 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31457 | NaCl | positive | growth | 0-9 % |
31457 | NaCl | positive | optimum | 2 % |
observation
@ref | observation |
---|---|
31457 | aggregates in clumps |
67770 | quinones: MK-7 |
67771 | quinones: MK-7 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31457 | 22599 | arabinose | + | carbon source |
31457 | 17057 | cellobiose | + | carbon source |
31457 | 28757 | fructose | + | carbon source |
31457 | 28260 | galactose | + | carbon source |
31457 | 17234 | glucose | + | carbon source |
31457 | 17716 | lactose | + | carbon source |
31457 | 17306 | maltose | + | carbon source |
31457 | 37684 | mannose | + | carbon source |
31457 | 28053 | melibiose | + | carbon source |
31457 | 16634 | raffinose | + | carbon source |
31457 | 26546 | rhamnose | + | carbon source |
31457 | 17814 | salicin | + | carbon source |
31457 | 17992 | sucrose | + | carbon source |
31457 | 27082 | trehalose | + | carbon source |
31457 | 53424 | tween 20 | + | carbon source |
31457 | 53423 | tween 40 | + | carbon source |
31457 | 53425 | tween 60 | + | carbon source |
31457 | 53426 | tween 80 | + | carbon source |
31457 | 18222 | xylose | + | carbon source |
31457 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31457 | catalase | + | 1.11.1.6 |
31457 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location |
---|---|---|---|---|---|
31457 | seawater | ||||
67770 | Seawater of a marine solar saltern of the Yellow Sea | Republic of Korea | KOR | Asia | |
67771 | From sea water, marine solar saltern | Republic of Korea | KOR | Asia | the Yellow Sea |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Safety information
risk assessment
- @ref: 17213
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 31457
- description: Algoriphagus locisalis strain MSS-170 16S ribosomal RNA gene, partial sequence
- accession: AY835922
- length: 1477
- database: nuccore
- NCBI tax ID: 305507
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Algoriphagus locisalis strain DSM 23445 | 305507.7 | wgs | patric | 305507 |
66792 | Algoriphagus locisalis DSM 23445 | 2639762564 | draft | img | 305507 |
67770 | Algoriphagus locisalis DSM 23445 | GCA_900116615 | scaffold | ncbi | 305507 |
GC content
@ref | GC-content | method |
---|---|---|
31457 | 42 | |
67770 | 42 | high performance liquid chromatography (HPLC) |
67771 | 42.0 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 97.96 | no |
anaerobic | no | 98.926 | no |
halophile | no | 64.313 | no |
spore-forming | no | 95.003 | no |
glucose-util | yes | 91.185 | no |
motile | no | 91.856 | no |
flagellated | no | 97.572 | yes |
aerobic | yes | 89.405 | no |
thermophile | no | 98.962 | yes |
glucose-ferment | no | 90.757 | no |
External links
@ref: 17213
culture collection no.: DSM 23445, KCTC 12310, JCM 12597, CIP 108874
straininfo link
- @ref: 86698
- straininfo: 232815
literature
- topic: Phylogeny
- Pubmed-ID: 16014494
- title: Algoriphagus locisalis sp. nov., isolated from a marine solar saltern.
- authors: Yoon JH, Kang SJ, Oh TK
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63605-0
- year: 2005
- mesh: Bacterial Typing Techniques, Cytophagaceae/chemistry/*classification/genetics/isolation & purification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, *Sodium Chloride
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
17213 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23445) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23445 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31457 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27759 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
86698 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID232815.1 | StrainInfo: A central database for resolving microbial strain identifiers |